Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeHA_C0199 |
Symbol | |
ID | 6490716 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
Kingdom | Bacteria |
Replicon accession | NC_011083 |
Strand | - |
Start bp | 205497 |
End bp | 208043 |
Gene Length | 2547 bp |
Protein Length | 848 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642740478 |
Product | outer membrane usher protein FimD |
Protein accession | YP_002044152 |
Protein GI | 194450545 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.548141 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 88 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGCAAAA GGCAACACCG GGTATTTTAT TTATCGCGCT GCGCTGTGTG TATCGCGCTG GGCAGCACGT TCGCACACGT TGCATGGGCG CGCGACTATT TCAATCCGGC ATTTATTGAA AACCATGGGC AGGCGAGTCG CACAAGCGTC GAACTGTCGA CATTTGATAA CGACAAAAGC CAGCTGCCTG GCACCTATTA CGTCACTATC AATATCAATA AAACAGAAAT CGGCGCACGA AACGTTGATT TTCAACTCGC GACGCTCAGT GACGGTCAAC AGGCATTACA GGGCTGTTTA CGGCTCCAGG AACTAAAAGA TAACGGCGTC AAAACCGACC TTTTTCCAAC GCTGGAGAGT GAAAAAGGCT GCGTCGATCT CAGCGTTATC CCCGGCGCCA GCCAGCGGTT TGATTTTCAG CAACAGGCAT TATCAGTAAG CATCCCGCAA CTCTACATCG CCAACAACGC ACGCGGCTAC GTACCGCCGG AAAAGTGGCA GGAGGGGATT ACCGCGCTGA TGCTGAACTA CAGCTTCAGC GGCTATAAAG AGTACGGTTC CAGTGAGGAT TCCGACGATG CGGAATCGAA GTATCTCGCT CTCCAGCCGG GTTTTAACCT CGGGCCGTGG CGTTTTCGCA ACTACAGTAA CTGGAGTTCA AATAACGGCG AGAGCGGTAG CTGGAACAGC GTTTATAACT ATTTACAGCG CGACATTATC GCGCTGAAAA GCCAGTTCAC CGCCGGAGAC AGCAATACGC CATCCGACGT GTTCGACAGC GTACCTTTTC GCGGCCTCCA GCTCACCTCT GACGATCAAA TGCAGCCCAA CAGCCAGCGT GGTTACGCCC CGACGATTCG CGGCATCGCC CGTTCAAACG CGCAGGTTAT CGTGCGGCAA AACGGCTATA TCGCCTATCA GACCGCCGTT TCGCCGGGCG AATTTGAAAT CAACGATATG TTTCCCACCG GCAGCAACGG CGACTATGAC GTGACGGTAA AAGAAACCGA CGGCAGCGAA CAGCACTTTA TCGTGCCCTA CTCTTCGCTG CCGATTCTGC AGCGCACCGG ACGGACAAAA TACAGCGTGA CCGTGGGTAA ATATCGCGAT TATAACAACC ACACGCTGGA CGACTTCGGC CAGGCGACCC TGCTGTACGG CCTGCCGTGG GGCATCACCC TGTACGGCGG CAGCCAGATT GCCAGCGATA AATACCAGTC CGTCGCCTTC GGCGTCGGGC AAAATATGCA GATGCTGGGG GCCATTTCCC TGGACGGCAT CTGGTCGCAC GCCAAATTTG ACGATGGCCG CAAAGAAATC GGGCAATCCT GGCGCGTCCG CTACAGCAAG GGCGTCGTCA GTACGGGCAC CACGTTTTCG CTGGCCGGCT ATCGTTACGC CAGCGAAAAC TACAATTCGC TGAGCGAGGT GATCAACCCG GACGACGATT TTTATGATAA CTACGGCAAG CGCCATAATC GTTTCGAAGC TTCGGTCAAC CAGCAAATTA GCAATACGCT CGGTTCCTTA ACGCTAAGTT GGGTCAAAGA AGATTACTGG CACAGCGCGC AGCAGATGGA ATCCCTGAGC GCCAGCTACA ACAATAGCTG GGGTCCGGTG AGCTATACGC TGAGCTACAG CTATAACAAA AACACCTACC AGTACCGTTC GGACAATGAC GATGATGACA ACGACGACGA TCGTTATAAC CAGAACGATC GGCTGTTCAC GCTGTCGCTG CACGTTCCGT TTACGGTGTT CGATTCCAGG CTATACGCCA GCTATATGCT GAACACGCGT AAGCACGATG CCACGGTAAA CAGCACCACC CTTAGCGGCA CCGCGCTGCG TGACAGAAAC CTGAACTGGT CGTTACAGCA AAGCCACAGC ACACAAGACG GTGATTCCGG CGGGGTAAAC GCCAGCTATA AAGGCACTTA TGCCAACCTC AACGCCGGTT ACAATCAGTC GCCAGATAGC CAACAGGTCA GCTACGGCAT CAGCGGCGGC ATTCTGGCGC ACGAAAACGG TATTACCCTG AGCCAGCCGA TTACCGGCGC GGCGATTTTA ATTAAAGCGC CCGGCGCCAG CGGCGTTTCG GTTGAAAACC AGACCGGCGT CGCCACCGAC TTCCGGGGTT ATACGGTGAT CCCCAACGTC ACGCCGTATT ATCGCTACGA TATCTCGCTC GACAGCAGCA CGTTTGCTGA CAACGTGGAT ATTCCGCTCA ACAACCAGAC CGTCTACCCG ACGCGTAATG CGGTGGTGCG CGCGGCGTAT GACACGCATA AGGGCTATCG CGTGTTGTTA ACGCTGACGC GCAGCAATGG CGAGCCCGTG CCCTTTGGCG CGACGGCAAG CGTCGATGGG CAGGATGCGA ACCTGGCCAG TATCGTCGGC GATAAAGGCC AGGTCTTCCT CAGCGGCCTG CCGGAAGAGG GCCTGCTGCT GGTGAACTGG GGAAGCGCCT CTTGCCGCAC GGATTACCGC CTGGATATCA GCAAAAATAT GAACGGCATA GTGATGGCGA ACGCCGTCTG CCAGTGA
|
Protein sequence | MRKRQHRVFY LSRCAVCIAL GSTFAHVAWA RDYFNPAFIE NHGQASRTSV ELSTFDNDKS QLPGTYYVTI NINKTEIGAR NVDFQLATLS DGQQALQGCL RLQELKDNGV KTDLFPTLES EKGCVDLSVI PGASQRFDFQ QQALSVSIPQ LYIANNARGY VPPEKWQEGI TALMLNYSFS GYKEYGSSED SDDAESKYLA LQPGFNLGPW RFRNYSNWSS NNGESGSWNS VYNYLQRDII ALKSQFTAGD SNTPSDVFDS VPFRGLQLTS DDQMQPNSQR GYAPTIRGIA RSNAQVIVRQ NGYIAYQTAV SPGEFEINDM FPTGSNGDYD VTVKETDGSE QHFIVPYSSL PILQRTGRTK YSVTVGKYRD YNNHTLDDFG QATLLYGLPW GITLYGGSQI ASDKYQSVAF GVGQNMQMLG AISLDGIWSH AKFDDGRKEI GQSWRVRYSK GVVSTGTTFS LAGYRYASEN YNSLSEVINP DDDFYDNYGK RHNRFEASVN QQISNTLGSL TLSWVKEDYW HSAQQMESLS ASYNNSWGPV SYTLSYSYNK NTYQYRSDND DDDNDDDRYN QNDRLFTLSL HVPFTVFDSR LYASYMLNTR KHDATVNSTT LSGTALRDRN LNWSLQQSHS TQDGDSGGVN ASYKGTYANL NAGYNQSPDS QQVSYGISGG ILAHENGITL SQPITGAAIL IKAPGASGVS VENQTGVATD FRGYTVIPNV TPYYRYDISL DSSTFADNVD IPLNNQTVYP TRNAVVRAAY DTHKGYRVLL TLTRSNGEPV PFGATASVDG QDANLASIVG DKGQVFLSGL PEEGLLLVNW GSASCRTDYR LDISKNMNGI VMANAVCQ
|
| |