| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeHA_C0026 |
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| Symbol | |
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| ID | 6488980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011083 |
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| Strand | + |
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| Start bp | 26958 |
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| End bp | 29624 |
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| Gene Length | 2667 bp |
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| Protein Length | 888 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642740320 |
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| Product | outer membrane usher protein FimD |
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| Protein accession | YP_002043994 |
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| Protein GI | 194449449 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0792355 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 79 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCGCAAC GACGCCAGCA CGCGTTTGTC CAGCTTCATG ATGTTATGCG TAATCAGCTT
TTCATGACGC GATATTACTC CAGCGTAACT AAACCCGTAT TAACCCCGCT GGCGTTGGCT
ATCGCACTGG CGCCTGCGCC GGGGTGGGCG GAAAACTATT TCAACCCGGC GTTTCTGTCT
GACGACCCGT CTGCGGTGGC CGACCTATCG ACCTTTTCCC GTAATGCCCA GGCGGCGGGG
ATGTATCGCG TTGACGTTTA CCTGAACAAT ACGTTTCTCG CGACCAGAGA CATTGCCTTC
CAGGCGGTGA AGACGACGGG AAAAAGCGCG CCCACCGATG ACAGCGGATT ACGCGCCTGC
CTGACGCCTG AAATGCTTAA AAATATGGGG GTAAACACCG GGGCGTTTCC ATTGTTGGCG
AAGGCGGCGG CGGGAAGTTG CCCGGATCTC GCCAGTGCGA TACCGGCCGC CCGGACCCGC
TTTGATTTTG CGCAGCAACG TCTCGACATT AGCATCCCGC AGGCGGCGAT GGTTGCCAGC
GCCAGAGGCT ATATCCCACC GCAATACTGG GATGAAGGTA TTAACGCGTT GCTATTGAAT
TACACCTTTA CCGGCGCGAA TAGTCAGGAT CGGAGCCCTG GCGGCAGTGC GGAGAACAGC
TATTTTCTTG GATTGAATAG CGGCCTTAAT CTGGGGGCCT GGCGGTTACG CGACTACTCC
ACATGGAACG CGAATAGCGG CGATCAGAAT AGCGACAGCG ACTGGCAGCA CATCAGTACT
TATCTGGAAC GTGATGTGGT CTTTTTGCAG GGAGAACTGA CGGCAGGCGA TAGTTATACC
CCCTCCGCAT TATTCGACAG CCTTCCTTTT CGCGGGCTAC AACTGGCGTC TGACGACAAT
ATGTTGCCAG ACAGCATGAA GGGCTTCGCG CCGACCATTC ACGGCATTGC CAGAAGCAAC
GCGCAAGTGA CCATTCGGCA AAACGGCTAC ATCATCAATC AGCGCTATGT GCCGCCCGGG
GCATTTACTA TTAATGATCT CTATCCTACC GCCGCCAGCG GCGATTTGAC TGTGGAAGTC
AAAGAATCCG ACGGTTCTAT TAATCGCTAT AACGTGCCCT ATTCCGCCGT GCCGATTCTA
CAACGAGAAG GGCGGCTGAA GTATGCGGCG ACGGTGGCGG AGTATCGCAG CGATAGTAGT
CAAAAAGAGA AGGTGAAATT CAGTCAGGCG ACCTTGATAT GGGGGTTACC GCATGGTTTT
ACGCTGTATG GCGGAACACA ACTTTCCAGT CATTATCACG CGCTGGCGAT CGGCAGCGGC
GCAAATCTGG GCGACTGGGG CGCGGTGTCG CTGGATGTCA CCCAGGCTAC CAGTACGCTG
GCGGATAATA ACACCTACCA GGGGCAATCG CTGCGTTTCC TGTATGCCAA ATCGCTTGCA
CAGTCAGGAA CCAATTTACA GCTTATGGGC TATCGCTATT CAACCTCGGG CTTTTATACG
CTGGATGATA CCACGTGGAA ACGGATGAGC GGCTATGACG ATGACAGTCG GACTGACAGC
GATAAAAGCA GGCCGGAATG GGCGGATTAT TACAATCTTT ATTATACCAG GAGGGGGAAA
GTACAACTCG ATATCAATCA ACAGCTAGGC GGGTTGGGAT CGCTTTTTAT TACCGGCAGT
CAGCAAAGTT ACTGGCACAC TGATGAAAAG GATTCTTTGT TGCAGGTGGG ATACAGCGAT
ACGCTGGCGG GTATTGCATG GAGCGTTTCT TACAACAATA ACAAATCCGC AGGCGATGCG
GAGCGCGATC AAATTTTCGC GCTGAATATC TCGGTGCCGC TAAGTCAATG GCTGCAACAC
GATGATGAAG TCACGCGCCA TCACAATGTT TACGCTACCT TTAGCACCAG TACGGACAAA
CAGCATAACG TTATGCAGAA TGCGGGCCTT AGCGGCACAC TGCTGGACGA AAACAATCTT
AGTTACAACA TACAGCAAGG CTATCAGAAT CACGGTATTG GCGAAAGCGG CGCCGCTAGC
CTGGAATACG ATGGCACGAA AGGTAACGCC AATATTGGCT ATAACGTTAG CGATAACGGC
GATTACCAGC AGGTGAACTA TGGCCTGAGC GGCGGCCTGG TGGCGCACGC GCATGGAGTG
ACGCTAAGCC AGCCGTTAGG CAATACCAAT ATTTTGATTG CCGCGCCGGG CGCAGCCAAT
GTCGGCGTTG TCGACCAGCC GGGTATTCAT ACGGACGCGC GTGGCTATGC GGTGGTGCCG
TATGCGACGA CATATCGCCA AAACCGTATG GCGCTGGACG TTAACGCCAT GGCTGATGAT
GTCGATATTG ATGACGCGGT GACTCGCGTT GTGCCGACCG AAGGCGCGCT GGTTCTGGCC
AGCTTTAAAG CGCGGGTTGG CGCGCGTGCC CTGGTAACGC TGAATCATAA CGGTAAGCCT
GTACCCTTTG GCGCAACGGT GACGGTGAAT GATCGCCATG CGGAGGCGAT TGTTGACGAG
GCCGGGGAGG TCTATCTTTC CGGGTTGTCA GCGCAAGGCG TTCTGCACGT TCGCTGGGGG
AACCTGCCGG ATCAACAGTG CGTCGCGTCC TATCATCTCT CTTCCTCCCG TCAGATTCTG
AGTCGACAAC ATGCGGAGTG TCATTAA
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| Protein sequence | MAQRRQHAFV QLHDVMRNQL FMTRYYSSVT KPVLTPLALA IALAPAPGWA ENYFNPAFLS
DDPSAVADLS TFSRNAQAAG MYRVDVYLNN TFLATRDIAF QAVKTTGKSA PTDDSGLRAC
LTPEMLKNMG VNTGAFPLLA KAAAGSCPDL ASAIPAARTR FDFAQQRLDI SIPQAAMVAS
ARGYIPPQYW DEGINALLLN YTFTGANSQD RSPGGSAENS YFLGLNSGLN LGAWRLRDYS
TWNANSGDQN SDSDWQHIST YLERDVVFLQ GELTAGDSYT PSALFDSLPF RGLQLASDDN
MLPDSMKGFA PTIHGIARSN AQVTIRQNGY IINQRYVPPG AFTINDLYPT AASGDLTVEV
KESDGSINRY NVPYSAVPIL QREGRLKYAA TVAEYRSDSS QKEKVKFSQA TLIWGLPHGF
TLYGGTQLSS HYHALAIGSG ANLGDWGAVS LDVTQATSTL ADNNTYQGQS LRFLYAKSLA
QSGTNLQLMG YRYSTSGFYT LDDTTWKRMS GYDDDSRTDS DKSRPEWADY YNLYYTRRGK
VQLDINQQLG GLGSLFITGS QQSYWHTDEK DSLLQVGYSD TLAGIAWSVS YNNNKSAGDA
ERDQIFALNI SVPLSQWLQH DDEVTRHHNV YATFSTSTDK QHNVMQNAGL SGTLLDENNL
SYNIQQGYQN HGIGESGAAS LEYDGTKGNA NIGYNVSDNG DYQQVNYGLS GGLVAHAHGV
TLSQPLGNTN ILIAAPGAAN VGVVDQPGIH TDARGYAVVP YATTYRQNRM ALDVNAMADD
VDIDDAVTRV VPTEGALVLA SFKARVGARA LVTLNHNGKP VPFGATVTVN DRHAEAIVDE
AGEVYLSGLS AQGVLHVRWG NLPDQQCVAS YHLSSSRQIL SRQHAECH
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