Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A4925 |
Symbol | deoB |
ID | 6483946 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 4793917 |
End bp | 4795140 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642740136 |
Product | phosphopentomutase |
Protein accession | YP_002043810 |
Protein GI | 194445257 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1015] Phosphopentomutase |
TIGRFAM ID | [TIGR01696] phosphopentomutase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.141985 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 94 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGTG CATTTATTAT GGTGCTGGAC TCATTCGGCA TCGGCGCTAC TGAAGACGCG GATCGTTTTG GCGACGTAGG TTCCGACACT CTGGGCCACA TCGCAGAAGC TTGCGCCAAA GGCGAAGCTG ACAATGGCCG TAAAGGCCCG TTGAATCTGC CTAACCTGAC TCGTCTGGGG CTGGTGAAAG CGCATGAAGG CTCTACCGGT AAAATTGCCG CCGGCATGGA CGGCAACGCG GACGTTATTG GCGCATACGC ATGGGCGCAC GAACTGTCCT CCGGCAAAGA TACGCCGTCC GGCCACTGGG AAATCGCCGG CGTGCCGGTG CTGTTCGACT GGGGCTATTT CAGCGATCAC GAAAACAGCT TCCCGCAGGA ACTGCTGGAT AAGCTGGTGA AACGCGCTAA CCTGCCGGGC TACCTCGGTA ACTGCCACTC TTCCGGTACG GTCATTCTGG ACCAGCTCGG CGAAGAGCAC ATGAAAACCG GCAAGCCGAT TTTCTACACC TCCGCTGACT CCGTGTTCCA GATTGCCTGC CACGAAGAGA CCTTTGGCCT GGATAAACTC TACGAGCTGT GCGAAATCGC CCGTGAAGAG CTGACCGAAG GCGGCTACAA CATTGGCCGC GTGATCGCGC GTCCGTTTAT CGGCGACAAG GCCGGTAACT TCCAGCGTAC CGGCAACCGT CACGACCTGG CCGTAGAACC GCCAGCGCCG ACTGTGCTGC AGAAACTGGT CGATGAAAAA CAGGGCCACG TGGTGTCCGT CGGTAAGATT GCCGACATCT ACGCCAACTG CGGCATCACT AAGAAAGTGA AAGCGACCGG TCTGGACGCG CTGTTCGACG CGACCCTCAA AGAGATGAAA GAAGCGGGCG ATAAAACCAT CGTCTTCACT AACTTCGTCG ACTTCGACTC TTCCTGGGGC CACCGTCGCG ACATCGCGGG CTACGCCGCA GGCCTGGAGC TGTTTGACCG CCGTCTGCCG GAGCTGATGG AGCTGGTGGG GGAAGATGAC ATTCTAATCC TGACCGCTGA CCACGGCTGT GACCCGAGCT GGACCGGTAC TGACCATACC CGTGAGCACA TTCCGGTGCT GATCTACGGT CCAAAAGTCA AACCTGGCTC TTTAGGTCAC CGTGAAACCT TCGCGGATAT CGGCCAGACG CTGGCGACCT ACTTTGGTAC ATCGCCGATG GACTACGGTA AAAACATGCT GTGA
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Protein sequence | MKRAFIMVLD SFGIGATEDA DRFGDVGSDT LGHIAEACAK GEADNGRKGP LNLPNLTRLG LVKAHEGSTG KIAAGMDGNA DVIGAYAWAH ELSSGKDTPS GHWEIAGVPV LFDWGYFSDH ENSFPQELLD KLVKRANLPG YLGNCHSSGT VILDQLGEEH MKTGKPIFYT SADSVFQIAC HEETFGLDKL YELCEIAREE LTEGGYNIGR VIARPFIGDK AGNFQRTGNR HDLAVEPPAP TVLQKLVDEK QGHVVSVGKI ADIYANCGIT KKVKATGLDA LFDATLKEMK EAGDKTIVFT NFVDFDSSWG HRRDIAGYAA GLELFDRRLP ELMELVGEDD ILILTADHGC DPSWTGTDHT REHIPVLIYG PKVKPGSLGH RETFADIGQT LATYFGTSPM DYGKNML
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