Gene SNSL254_A4649 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A4649 
Symbol 
ID6485921 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp4540278 
End bp4540997 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content49% 
IMG OID642739871 
ProductDNA-binding transcriptional activator DcuR 
Protein accessionYP_002043553 
Protein GI194444137 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG4565] Response regulator of citrate/malate metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.420528 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones69 
Fosmid unclonability p-value0.899721 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAATG TATTAATTGT CGATGACGAT GCGATGGTCG CGGAGTTAAA TCGCCGCTAT 
GTCGCGCAAA TCTCCGGTTT TCATTGTTGT GGAACCGCTT CGACGCTGGA AAAAGCGAAA
GAGTTTATCT TCAACAGTGA AAATCACATT GACCTAATCC TGCTGGATAT CTACATGCAG
CAGGAAAACG GATTGGATCT GCTGCCTGTC CTGCACAGCG CAGGCTGCAA AAGCGACGTT
ATTGTCATTT CTTCTGCCGC TGACGCCGCC ACCATTAAAG ATTCGCTTCA CTACGGCGTG
GTGGATTATC TGATCAAGCC TTTTCAGGCC ACGCGCTTTG AAGAAGCGTT GACCGGCTGG
CTACGTAAGA AAACGGCGAT GGAAAAACGC CAGTATTACG AACAGTCTGA GCTTGACCTG
CTCATTCACG GTAATTCATC CAGCGAGCAG GAGCCTCGTC GGCTGCCAAA AGGGCTGACC
CAGCAAACGC TACGCACCTT ATGCCAGTGG ATTGATGCGC ATCAGGAGCA GGAATTTTCT
ACCGACGAGT TGGCCAACGA AGTGAATATC TCACGCGTCT CCTGCCGTAA ATATCTCATC
TGGCTGGTAA ATTGCCATAT CTTGTTTACC AGTATTCATT ACGGCGTGAC CGGCAGGCCG
GTTTACCGCT ACCGCGTTCA GCCGGAACAT TACTCTTTAC TGAAACAATA TTGTCAGTAA
 
Protein sequence
MINVLIVDDD AMVAELNRRY VAQISGFHCC GTASTLEKAK EFIFNSENHI DLILLDIYMQ 
QENGLDLLPV LHSAGCKSDV IVISSAADAA TIKDSLHYGV VDYLIKPFQA TRFEEALTGW
LRKKTAMEKR QYYEQSELDL LIHGNSSSEQ EPRRLPKGLT QQTLRTLCQW IDAHQEQEFS
TDELANEVNI SRVSCRKYLI WLVNCHILFT SIHYGVTGRP VYRYRVQPEH YSLLKQYCQ