Gene SNSL254_A4486 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A4486 
SymbolrpoB 
ID6486909 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp4357362 
End bp4361390 
Gene Length4029 bp 
Protein Length1342 aa 
Translation table11 
GC content54% 
IMG OID642739719 
ProductDNA-directed RNA polymerase subunit beta 
Protein accessionYP_002043405 
Protein GI194444496 
COG category[K] Transcription 
COG ID[COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit 
TIGRFAM ID[TIGR02013] DNA-directed RNA polymerase, beta subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value6.17327e-14 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGTTTACT CCTATACCGA GAAAAAACGT ATTCGTAAGG ATTTTGGTAA ACGTCCACAA 
GTTCTGGATG TACCTTATCT CCTTTCTATC CAGCTTGACT CGTTTCAGAA GTTTATCGAG
CAAGATCCTG AAGGGCAGTA CGGCCTGGAA GCAGCCTTCC GTTCCGTGTT CCCGATTCAG
AGCTACAGCG GTAATTCCGA GCTGCAGTAC GTCAGCTACC GCCTTGGCGA ACCGGTGTTT
GACGTTCAGG AATGTCAGAT CCGTGGCGTG ACCTATTCCG CACCGCTGCG CGTAAAACTG
CGTCTGGTGA TCTACGAGCG CGAAGCGCCG GAAGGCACCG TTAAAGACAT TAAAGAACAA
GAAGTCTACA TGGGCGAAAT TCCGCTCATG ACCGACAACG GTACCTTTGT TATCAACGGT
ACTGAGCGTG TTATCGTTTC TCAGCTGCAC CGTAGTCCGG GCGTCTTCTT TGACTCCGAC
AAAGGTAAAA CCCACTCTTC GGGTAAAGTG CTGTATAACG CGCGCATCAT TCCTTACCGT
GGTTCCTGGC TGGACTTCGA ATTCGATCCG AAGGACAACC TGTTCGTGCG TATCGACCGT
CGCCGTAAAC TGCCTGCGAC CATCATCCTG CGTGCGCTGA ACTACACCAC TGAGCAGATC
CTTGACCTGT TCTTTGAGAA AGTCGTCTTC GAAATTCGCG ACAACAAGCT GCAGATGGAG
CTGATTCCAG AACGTCTGCG CGGCGAAACT GCGTCGTTCG ATATCGAAGC TAACGGCAAG
GTGTACGTTG AAAAAGGCCG TCGCATTACC GCGCGTCATA TCCGTCAGCT GGAAAAAGAC
GATATCAAGC ATATCGAAGT TCCGGTTGAG TACATCGCAG GTAAAGTCGT CTCTAAAGAC
TACGTTGACG AATCCACTGG CGAGCTGATC TGCGCGGCGA ACATGGAGCT GAGCCTGGAT
CTGCTGGCTA AGCTGAGCCA GTCCGGCCAC AAGCGTATCG AAACGCTGTT TACCAACGAT
CTGGACCACG GCCCGTACAT TTCTGAAACG GTACGCGTCG ACCCAACTAA CGATCGTCTG
AGCGCGCTGG TAGAAATCTA CCGCATGATG CGCCCTGGTG AGCCGCCGAC TCGCGAAGCG
GCTGAAAGCC TGTTCGAGAA CCTGTTCTTC TCCGAAGACC GCTATGACCT GTCTGCGGTG
GGTCGTATGA AGTTCAACCG TTCTCTGCTG CGCGACGAAA TCGAAGGTTC CGGTATCCTG
AGCAAAGACG ACATCATTGA TGTCATGAAG AAGCTCATCG ATATCCGTAA CGGTAAAGGC
GAAGTGGATG ATATCGACCA CCTCGGCAAC CGTCGTATCC GTTCCGTCGG CGAAATGGCG
GAAAACCAGT TCCGCGTTGG CCTGGTGCGT GTAGAGCGTG CGGTGAAAGA GCGTCTGTCT
CTGGGCGATC TGGATACCCT GATGCCTCAG GATATGATCA ACGCCAAGCC GATTTCCGCC
GCAGTGAAAG AGTTCTTTGG TTCCAGCCAG CTGTCTCAGT TTATGGACCA GAACAACCCG
CTGTCTGAGA TTACGCACAA ACGTCGTATC TCCGCACTCG GCCCAGGCGG TCTGACCCGC
GAACGCGCAG GCTTCGAAGT TCGAGACGTA CACCCGACGC ACTACGGTCG CGTATGTCCT
ATCGAAACGC CGGAAGGTCC GAACATCGGT CTGATCAACT CCCTGTCCGT GTACGCACAG
ACTAACGAAT ATGGCTTCCT TGAGACGCCG TACCGTCGTG TGGTTGATGG CGTGGTCACT
GACGAAATTC ATTACCTGTC TGCTATCGAA GAAGGCAACT ACGTTATCGC TCAGGCGAAC
TCCAACCTGG ATGACGAAGG CCACTTTGTA GAAGATCTGG TGACCTGCCG TAGCAAAGGC
GAATCCAGCT TGTTCAGCCG CGACCAGGTT GACTACATGG ACGTATCCAC CCAGCAGGTG
GTCTCCGTCG GTGCGTCCCT GATCCCGTTC CTGGAACACG ATGACGCCAA CCGTGCATTG
ATGGGTGCGA ACATGCAACG TCAGGCGGTT CCGACTCTGC GTGCTGATAA GCCGCTGGTG
GGTACCGGTA TGGAACGTGC TGTCGCCGTC GACTCCGGTG TTACTGCAGT AGCTAAACGT
GGCGGTACTG TTCAGTACGT GGATGCATCC CGTATCGTTA TCAAAGTTAA CGAAGACGAG
ATGTACCCGG GCGAAGCGGG TATCGACATC TATAACCTGA CCAAATACAC CCGCTCTAAC
CAGAACACCT GTATCAACCA GATGCCATGT GTGTCTCTGG GCGAGCCGGT TGAACGCGGC
GACGTGCTGG CAGACGGTCC GTCCACCGAC CTCGGCGAAC TGGCGCTCGG TCAGAACATG
CGCGTGGCGT TCATGCCGTG GAACGGCTAC AACTTCGAAG ACTCCATCCT CGTATCCGAG
CGTGTTGTCC AGGAAGACCG TTTCACCACC ATCCACATTC AGGAACTGGC GTGCGTGTCC
CGTGACACCA AGCTGGGGCC GGAAGAGATC ACCGCTGATA TCCCGAACGT GGGTGAAGCT
GCGCTCTCCA AACTGGATGA ATCCGGTATC GTTTACATCG GCGCGGAAGT GACCGGCGGT
GACATTCTGG TCGGTAAGGT GACGCCGAAA GGTGAAACCC AGCTGACGCC GGAAGAGAAA
CTGCTGCGTG CGATCTTCGG TGAGAAAGCG TCTGACGTTA AAGACTCTTC TCTGCGCGTA
CCTAACGGTG TCTCCGGTAC GGTTATCGAC GTTCAGGTCT TTACTCGCGA TGGCGTAGAA
AAAGACAAAC GTGCTCTGGA AATCGAAGAG ATGCAGCTCA AGCAGGCGAA AAAAGACCTG
TCTGAAGAAC TGCAGATCCT CGAAGCGGGC CTGTTTAGCC GTATCCGTGC GGTGCTGGTG
TCCGGCGGCG TTGAAGCTGA GAAGCTCGAC AAACTGCCGC GCGACCGCTG GCTGGAACTC
GGTCTGACCG ACGAAGAGAA ACAAAATCAG CTGGAACAAC TGGCTGAGCA GTATGACGAA
CTGAAACACG AGTTCGAGAA AAAACTTGAA GCGAAGCGCC GTAAAATCAC CCAGGGCGAC
GATCTGGCGC CGGGCGTGCT GAAGATCGTG AAGGTCTATC TGGCCGTTAA ACGCCGTATC
CAGCCGGGTG ATAAGATGGC AGGTCGTCAC GGTAACAAGG GTGTTATCTC TAAGATCAAC
CCGATCGAAG ACATGCCTTA CGATGAAAAC GGCACGCCGG TCGACATCGT ACTGAACCCG
CTGGGCGTAC CGTCTCGTAT GAACATCGGT CAGATTCTGG AAACCCACCT GGGTATGGCT
GCGAAAGGTA TTGGCGACAA GATTAACGCC ATGCTGAAAC AGCAGCAGGA AGTCGCGAAA
CTGCGCGAAT TCATCCAGCG TGCCTACGAT CTGGGCGCCG ACGTTCGTCA GAAAGTCGAC
CTGAGCACCT TCAGCGATGA TGAAGTGCTG CGTCTGGCAG AAAACCTGCG TAAAGGTATG
CCGATTGCCA CACCAGTGTT TGACGGTGCG AAAGAAGCGG AAATCAAAGA GCTGCTGAAA
CTGGGCGACC TGCCGACCTC CGGTCAGATC ACCCTGTTCG ATGGCCGTAC GGGTGAACAG
TTCGAACGTC CGGTAACCGT CGGTTACATG TACATGCTGA AACTGAACCA CCTGGTTGAT
GACAAGATGC ATGCGCGTTC TACCGGTTCT TACAGCCTGG TTACTCAGCA GCCGCTGGGT
GGTAAGGCGC AGTTCGGTGG TCAGCGCTTC GGGGAGATGG AAGTGTGGGC GCTGGAAGCT
TACGGCGCCG CCTACACCCT GCAGGAAATG CTCACCGTTA AGTCTGATGA CGTGAACGGT
CGTACCAAGA TGTATAAGAA CATCGTGGAC GGCAACCATC AGATGGAACC GGGTATGCCG
GAATCCTTCA ACGTTCTGTT GAAAGAGATC CGCTCGCTGG GCATCAACAT CGAACTGGAA
GACGAGTAA
 
Protein sequence
MVYSYTEKKR IRKDFGKRPQ VLDVPYLLSI QLDSFQKFIE QDPEGQYGLE AAFRSVFPIQ 
SYSGNSELQY VSYRLGEPVF DVQECQIRGV TYSAPLRVKL RLVIYEREAP EGTVKDIKEQ
EVYMGEIPLM TDNGTFVING TERVIVSQLH RSPGVFFDSD KGKTHSSGKV LYNARIIPYR
GSWLDFEFDP KDNLFVRIDR RRKLPATIIL RALNYTTEQI LDLFFEKVVF EIRDNKLQME
LIPERLRGET ASFDIEANGK VYVEKGRRIT ARHIRQLEKD DIKHIEVPVE YIAGKVVSKD
YVDESTGELI CAANMELSLD LLAKLSQSGH KRIETLFTND LDHGPYISET VRVDPTNDRL
SALVEIYRMM RPGEPPTREA AESLFENLFF SEDRYDLSAV GRMKFNRSLL RDEIEGSGIL
SKDDIIDVMK KLIDIRNGKG EVDDIDHLGN RRIRSVGEMA ENQFRVGLVR VERAVKERLS
LGDLDTLMPQ DMINAKPISA AVKEFFGSSQ LSQFMDQNNP LSEITHKRRI SALGPGGLTR
ERAGFEVRDV HPTHYGRVCP IETPEGPNIG LINSLSVYAQ TNEYGFLETP YRRVVDGVVT
DEIHYLSAIE EGNYVIAQAN SNLDDEGHFV EDLVTCRSKG ESSLFSRDQV DYMDVSTQQV
VSVGASLIPF LEHDDANRAL MGANMQRQAV PTLRADKPLV GTGMERAVAV DSGVTAVAKR
GGTVQYVDAS RIVIKVNEDE MYPGEAGIDI YNLTKYTRSN QNTCINQMPC VSLGEPVERG
DVLADGPSTD LGELALGQNM RVAFMPWNGY NFEDSILVSE RVVQEDRFTT IHIQELACVS
RDTKLGPEEI TADIPNVGEA ALSKLDESGI VYIGAEVTGG DILVGKVTPK GETQLTPEEK
LLRAIFGEKA SDVKDSSLRV PNGVSGTVID VQVFTRDGVE KDKRALEIEE MQLKQAKKDL
SEELQILEAG LFSRIRAVLV SGGVEAEKLD KLPRDRWLEL GLTDEEKQNQ LEQLAEQYDE
LKHEFEKKLE AKRRKITQGD DLAPGVLKIV KVYLAVKRRI QPGDKMAGRH GNKGVISKIN
PIEDMPYDEN GTPVDIVLNP LGVPSRMNIG QILETHLGMA AKGIGDKINA MLKQQQEVAK
LREFIQRAYD LGADVRQKVD LSTFSDDEVL RLAENLRKGM PIATPVFDGA KEAEIKELLK
LGDLPTSGQI TLFDGRTGEQ FERPVTVGYM YMLKLNHLVD DKMHARSTGS YSLVTQQPLG
GKAQFGGQRF GEMEVWALEA YGAAYTLQEM LTVKSDDVNG RTKMYKNIVD GNHQMEPGMP
ESFNVLLKEI RSLGINIELE DE