Gene SNSL254_A4290 details

Gene Information

• Locus tag: SNSL254_A4290
• Symbol: typA
• ID: 6486402
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Newport str. SL254
• Kingdom: Bacteria
• Replicon accession: NC_011080
• Strand: +
• Start bp: 4181970
• End bp: 4183793
• Gene Length: 1824 bp
• Protein Length: 607 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 642739536
• Product: GTP-binding protein
• Protein accession: YP_002043230
• Protein GI: 194443181
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.40714
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 91
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGATCGAAA ATTTGCGTAA CATCGCCATC ATCGCGCACG TTGACCATGG TAAAACTACC 
CTGGTTGATA AGCTGCTCCA GCAATCCGGT ACGTTCGACG CGCGTGCCGA AACTCAAGAG 
CGAGTGATGG ACTCCAACGA TTTGGAGAAA GAGCGTGGTA TTACTATCCT CGCTAAAAAC 
ACCGCTATTA AATGGAATGA TTACCGTATC AACATCGTTG ATACTCCCGG GCACGCTGAC 
TTCGGTGGTG AAGTAGAGCG CGTCATGTCC ATGGTTGACT CTGTGCTGCT GGTGGTTGAC 
GCATTTGACG GCCCGATGCC GCAAACGCGC TTCGTGACCA AAAAAGCCTT TGCTCATGGC 
CTGAAACCCA TTGTGGTTAT TAACAAAGTT GACCGTCCTG GCGCGCGCCC TGACTGGGTT 
GTTGACCAGG TATTCGACCT GTTTGTTAAC CTCGACGCGA CCGACGAACA GCTGGACTTC 
CCGATCATCT ACGCTTCGGC GCTGAACGGT ATCGCGGGTC TGGACCACGA AGATATGGCG 
GAAGACATGA CCCCGCTATA TCAGGCGATC GTTGATCATG TTCCGGCGCC GGACGTTGAC 
CTCGATGGTC CGTTGCAGAT GCAGATCTCC CAGCTGGACT ACAACAACTA CGTTGGCGTT 
ATCGGCATCG GCCGTATCAA ACGCGGCAAA GTGAAGCCGA ACCAGCAGGT CACTATCATC 
GATAGTGAAG GGAAAACCCG TAACGCGAAA GTAGGTAAAG TGCTCACGCA TCTGGGTCTG 
GAGCGTATCG ACAGCGATAT CGCCGAAGCG GGCGATATCA TTGCGATCAC CGGTCTGGGC 
GAGCTGAACA TTTCCGACAC CATCTGCGAC CCGCAGAACG TTGAAGCGCT GCCGGCGCTG 
TCCGTTGATG AGCCGACCGT GTCTATGTTC TTCTGCGTTA ACACCTCGCC GTTCTGCGGT 
AAAGAAGGTA AGTTTGTGAC TTCTCGTCAG ATTCTTGACC GTCTGAACAA AGAGTTGGTG 
CATAACGTGG CGCTGCGCGT TGAAGAAACC GAAGATGCGG ATGCGTTCCG TGTATCCGGT 
CGTGGCGAAC TGCACCTGTC CGTGCTGATT GAAAACATGC GTCGTGAAGG TTTCGAACTG 
GCGGTTTCCC GTCCGAAAGT TATCTTCCGT GAAATCGACG GTCGTAAACA AGAGCCGTAC 
GAAAACGTGA CGCTGGACGT CGAAGAGCAG CACCAGGGGT CTGTCATGCA GGCGCTGGGC 
GAGCGTAAAG GCGACCTGAA AAACATGAAT CCGGACGGTA AAGGCCGCGT ACGTCTCGAC 
TACGTGATCC CAAGCCGTGG GCTGATTGGT TTCCGTTCAG AATTCATGAC CATGACTTCC 
GGTACGGGTC TGCTGTACTC CACCTTCAGC CATTACGACG ATATTCGTCC GGGTGAAGTG 
GGCCAGCGTC AGAACGGCGT ACTGATCTCT AACGGTCAGG GTAAAGCGGT GGCGTTTGCG 
CTGTTCGGTT TGCAGGATCG CGGTAAGCTG TTCCTGGGCC ACGGCGCGGA AGTTTATGAA 
GGCCAGATTA TTGGTATTCA CAGTCGCTCC AACGACCTGA CGGTAAACTG CCTGACCGGT 
AAGAAACTGA CCAACATGCG TGCGTCTGGT ACGGATGAAG CGGTGATTCT GGTTCCGCCA 
ATTAAAATGA GCCTTGAGCA AGCGCTGGAG TTCATTGATG ACGACGAACT GGTAGAAGTC 
ACCCCAACCT CTATCCGTAT CCGTAAACGT CACCTGACGG AAAACGATCG CCGCCGTGCG 
AACCGTGGTC AGAAAGAAGA GTAA 

 

Protein sequence

MIENLRNIAI IAHVDHGKTT LVDKLLQQSG TFDARAETQE RVMDSNDLEK ERGITILAKN 
TAIKWNDYRI NIVDTPGHAD FGGEVERVMS MVDSVLLVVD AFDGPMPQTR FVTKKAFAHG 
LKPIVVINKV DRPGARPDWV VDQVFDLFVN LDATDEQLDF PIIYASALNG IAGLDHEDMA 
EDMTPLYQAI VDHVPAPDVD LDGPLQMQIS QLDYNNYVGV IGIGRIKRGK VKPNQQVTII 
DSEGKTRNAK VGKVLTHLGL ERIDSDIAEA GDIIAITGLG ELNISDTICD PQNVEALPAL 
SVDEPTVSMF FCVNTSPFCG KEGKFVTSRQ ILDRLNKELV HNVALRVEET EDADAFRVSG 
RGELHLSVLI ENMRREGFEL AVSRPKVIFR EIDGRKQEPY ENVTLDVEEQ HQGSVMQALG 
ERKGDLKNMN PDGKGRVRLD YVIPSRGLIG FRSEFMTMTS GTGLLYSTFS HYDDIRPGEV 
GQRQNGVLIS NGQGKAVAFA LFGLQDRGKL FLGHGAEVYE GQIIGIHSRS NDLTVNCLTG 
KKLTNMRASG TDEAVILVPP IKMSLEQALE FIDDDELVEV TPTSIRIRKR HLTENDRRRA 
NRGQKEE