| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A4019 |
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| Symbol | ligB |
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| ID | 6482303 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 3904306 |
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| End bp | 3905991 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 642739278 |
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| Product | NAD-dependent DNA ligase LigB |
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| Protein accession | YP_002042988 |
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| Protein GI | 194445315 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 76 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGATTAT GGAAAAGTAT GGCGTGGGGA ATTTTATTGT GGCATTCGCA GAGTGGGGCG
CTTTGCCCGG CCTGGCCGCC AGCAAGGGCC GCTGAAGAAA TCACCCGTTT ACAGCAACAG
CTCGCTGACT GGAATGACAT CTACTGGAAA CAAGGGGTTA GCGCGGTTGA CGATAGTGTG
TACGACCAAC TCAGCGCAAG GCTGGTTCAG TGGCAACGCT GTGTTGGTCA GGATGTTTCA
TCTACTCCGG TTTCACCGCC GTTAAACGGT ACAACAATGC ACCCTGTTGC GCACACGGGC
GTACGTAAAC TCGCGGACCG ACAGGTGGTA GAACAGTGGA TGCGCGGGCG CAGCGAGCTT
TGGGTACAAC CAAAAGTGGA TGGTGTAGCG GTAACGCTGG TTTATCAAAA CGGTAAACTG
GCCAGGGCTA TCAGCCGGGG TAACGGACTA CAAGGCGAGG ACTGGACGCC AAAAATTCGC
CTGATCCCCT CTATACCGCA GTCAACACAA GGCGCGCTTG CTAACGCGGT GTTGCAGGGC
GAAATCTTTC TACAGCGCGA GGGACATATC CAGCAACGGA TGGGCGGGAT GAATGCGCGC
TCGAAAGTCG CAGGAATGTT AATGCGCCAG GATAACGCCT CCGCGCTAAA TTCGTTGGGT
ATTTTTATTT GGGCGTGGCC GGACGGTCCG GCAAATATGC CCGAAAGATT AAGCCAACTT
GCTAAGGCTG GATTCAGTCT GACGAAGAAA TATTCCCTGG TGGTAAAAGA TGCCAGCGAG
GTCGAGCGGG CGCGCCAGTC ATGGCTGACG TCAGCGTTGC CCTTTGTGAC GGATGGCGTA
GTGATACGCA TGGCTAAAGA GCCCGCGTCA CAATACTGGC GACCCGGGCA GGGCGACTGG
CTGGCAGCAT GGAAATATCC GCCAGTAGCG CAGGTCGCGC AAGTGAGCGC TATTCAGTTC
TCGGTGGGGA AAAGCGGCAA AATTACCGTA GTAGCGTCGC TTGTCCCCGT TATATTGGAT
GATAAGCGGG TTCAGCGGGT CAATATCGGT TCTGTGAAAC GTTGGGAAGC GTGGGATATC
GCGCCGGGCG ATCAGATCCT GGTGAGTCTG GCGGGGCAAG GCATTCCCCG GCTTGATGAG
GTCGTCTGGC GGAGTCGTGA ACGGAGTAAG CCTGTGCCGC CTGATAGCCA TTTCAACTCG
CTGACCTGCT TTTACGCGTC GGCAACGTGT CAGGAACAGT TTATCTCCAG GCTGATATGG
CTGGGGTCAC GGTCGGCGTT GGGTCTGGAC GGAATGGGTG AAGCCAGCTG GCGGGCCTTG
CATCAGACGC ATCGCTTTGA GCATATCTTC TCCTGGCTTA CCCTGACGTC AGCGCAAATA
GCCAACACGC CAGGCTTTGC TAAAGGAAAA AGCGAGCAGA TATGGCGGCA ATTTAACCTG
GCGCGCCGGC AGCCGTTTAC CCGCTGGATC ATGGCGATGG ATATCCCCTT AACGCAGGCC
GCATTACAGG CCAGCGGCGA TCGTTCATGG GAGCAGTTAT TAATGCGAAC AGAGCAACAC
TGGCGGCAGT TACCAGCGAC GGGCGAGCGT CGTGCCGGGA GAGTCATCGA CTGGCGGAAT
AATCTGCAGA TCAAAGCGCT GAGCAGATGG CTGGCTGCTC AGCATATTCC CGGATTTGGG
TCTTAG
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| Protein sequence | MRLWKSMAWG ILLWHSQSGA LCPAWPPARA AEEITRLQQQ LADWNDIYWK QGVSAVDDSV
YDQLSARLVQ WQRCVGQDVS STPVSPPLNG TTMHPVAHTG VRKLADRQVV EQWMRGRSEL
WVQPKVDGVA VTLVYQNGKL ARAISRGNGL QGEDWTPKIR LIPSIPQSTQ GALANAVLQG
EIFLQREGHI QQRMGGMNAR SKVAGMLMRQ DNASALNSLG IFIWAWPDGP ANMPERLSQL
AKAGFSLTKK YSLVVKDASE VERARQSWLT SALPFVTDGV VIRMAKEPAS QYWRPGQGDW
LAAWKYPPVA QVAQVSAIQF SVGKSGKITV VASLVPVILD DKRVQRVNIG SVKRWEAWDI
APGDQILVSL AGQGIPRLDE VVWRSRERSK PVPPDSHFNS LTCFYASATC QEQFISRLIW
LGSRSALGLD GMGEASWRAL HQTHRFEHIF SWLTLTSAQI ANTPGFAKGK SEQIWRQFNL
ARRQPFTRWI MAMDIPLTQA ALQASGDRSW EQLLMRTEQH WRQLPATGER RAGRVIDWRN
NLQIKALSRW LAAQHIPGFG S
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