Gene SNSL254_A4001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A4001 
Symbol 
ID6485718 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand- 
Start bp3889100 
End bp3889897 
Gene Length798 bp 
Protein Length265 aa 
Translation table11 
GC content46% 
IMG OID642739261 
Productlipopolysaccharide core biosynthesis protein 
Protein accessionYP_002042971 
Protein GI194442879 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.00922523 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones75 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTGAGC TGAAAGCGCC GTTAACCACA CTATGGCGCG GTAAAGATGC TTTTGAGGAA 
GTGAAAACGT TACAGGGCGA AGTGTTCAGA GAGCTGGAGA CGCGTCGAAC ATTGCGGTTC 
GAGCTGGACG GCAAAAGTTA CTTCCTGAAG TGGCATAAAG GCACTTCGCT GAAAGAAATT 
GTGAAGAACC TGATTTCGTT ACGTATGCCT GTTCTGGGCG CTGACAGAGA ATGGCACGCC 
ATTCATCGTC TACATGAGCT GGGTGTTGAT ACGATGCACG GCGTTGGTTT TGGTGAAAAA 
GGCGTAAACC CGCTAACCAG AACATCATTT ATTATCACCG AAGATTTAAC GCCTACCATT 
AGCCTTGAAG ACTACTGCGC TGACTGGGCT GTTAATCCAC CGGACGCGCA GGTGAAGTGG 
ATGATCATTA AGCGTGTTGC GACTATGGTA CGTAAAATGC ACGCCGGGGG AATTAACCAT 
CGCGACTGTT ATATTTGCCA CTTTCTTCTG CATTTACCTT TCACTGGTCG CGAAGAGGAT 
TTAAAAATCT CCGTAATCGA CCTGCATCGC GCGCAGATAC GCCAGCGTGT TCCCCTTCGC 
TGGCGTGACA AAGATTTAAT TGGGCTTTAT TTTTCTTCAA TGAATATTGG CCTGACTCAG 
CGAGATATAT TCCGGTTTAT GCGTGAGTAT TTCTCTCTTC CCCTGCGAGA GATTTTGCAA 
AAAGAATCGG GGTTGATTCA CCAGGCGGAT GTTAAAGCCG CTCGAATTAA AGAAAGAACA 
ATAAGAAAAA ATCTGTAA
 
Protein sequence
MVELKAPLTT LWRGKDAFEE VKTLQGEVFR ELETRRTLRF ELDGKSYFLK WHKGTSLKEI 
VKNLISLRMP VLGADREWHA IHRLHELGVD TMHGVGFGEK GVNPLTRTSF IITEDLTPTI 
SLEDYCADWA VNPPDAQVKW MIIKRVATMV RKMHAGGINH RDCYICHFLL HLPFTGREED 
LKISVIDLHR AQIRQRVPLR WRDKDLIGLY FSSMNIGLTQ RDIFRFMREY FSLPLREILQ 
KESGLIHQAD VKAARIKERT IRKNL