Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A3711 |
Symbol | |
ID | 6483632 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 3578927 |
End bp | 3579394 |
Gene Length | 468 bp |
Protein Length | 155 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 642738981 |
Product | leader peptidase HopD |
Protein accession | YP_002042692 |
Protein GI | 194446607 |
COG category | [N] Cell motility [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00474586 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 67 |
Fosmid unclonability p-value | 0.728501 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTGTTG CCCTCCCCTT TCTCATTTTT TATGCGTCGT TCTCTTTATT ACTTGGCATA TACGACGCGC GTACCGGTCT GCTACCTGAC CGGTTTACTT GTCCATTGCT GTGGGGTGGT CTGCTTTATC ACCAGATTTG CCTGCCGGAG CGTTTACCGG ATGCGCTTTG GGGCGCTATC GCCGGCTATG GCGGATTCGC GTTAATTTAC TGGGGCTATC GCCTGCGTTA TCAGAAAGAG GGGCTTGGAT ATGGCGACGT CAAGTACCTC GCTGCCTTAG GGGCGTGGCA TTGTTGGGAA ACACTGCCGT TACTGGTTTT CCTTGCCGCT ATGTTGGCCT GTGGCGGGTT TGGCGTCGCG CTACTGGTGA GAGGTAAATC GGCATTAATA AACCCGCTAC CTTTTGGGCC ATGGCTGGCG GTGGCGGGTT TCATAACAGG TTGGAAAGTT TTCTTTCCAG ACGGTTAA
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Protein sequence | MFVALPFLIF YASFSLLLGI YDARTGLLPD RFTCPLLWGG LLYHQICLPE RLPDALWGAI AGYGGFALIY WGYRLRYQKE GLGYGDVKYL AALGAWHCWE TLPLLVFLAA MLACGGFGVA LLVRGKSALI NPLPFGPWLA VAGFITGWKV FFPDG
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