Gene SNSL254_A3711 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A3711 
Symbol 
ID6483632 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp3578927 
End bp3579394 
Gene Length468 bp 
Protein Length155 aa 
Translation table11 
GC content53% 
IMG OID642738981 
Productleader peptidase HopD 
Protein accessionYP_002042692 
Protein GI194446607 
COG category[N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00474586 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value0.728501 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTGTTG CCCTCCCCTT TCTCATTTTT TATGCGTCGT TCTCTTTATT ACTTGGCATA 
TACGACGCGC GTACCGGTCT GCTACCTGAC CGGTTTACTT GTCCATTGCT GTGGGGTGGT
CTGCTTTATC ACCAGATTTG CCTGCCGGAG CGTTTACCGG ATGCGCTTTG GGGCGCTATC
GCCGGCTATG GCGGATTCGC GTTAATTTAC TGGGGCTATC GCCTGCGTTA TCAGAAAGAG
GGGCTTGGAT ATGGCGACGT CAAGTACCTC GCTGCCTTAG GGGCGTGGCA TTGTTGGGAA
ACACTGCCGT TACTGGTTTT CCTTGCCGCT ATGTTGGCCT GTGGCGGGTT TGGCGTCGCG
CTACTGGTGA GAGGTAAATC GGCATTAATA AACCCGCTAC CTTTTGGGCC ATGGCTGGCG
GTGGCGGGTT TCATAACAGG TTGGAAAGTT TTCTTTCCAG ACGGTTAA
 
Protein sequence
MFVALPFLIF YASFSLLLGI YDARTGLLPD RFTCPLLWGG LLYHQICLPE RLPDALWGAI 
AGYGGFALIY WGYRLRYQKE GLGYGDVKYL AALGAWHCWE TLPLLVFLAA MLACGGFGVA
LLVRGKSALI NPLPFGPWLA VAGFITGWKV FFPDG