| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3638 |
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| Symbol | |
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| ID | 6482669 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 3526908 |
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| End bp | 3528848 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642738913 |
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| Product | regulatory protein CsrD |
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| Protein accession | YP_002042630 |
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| Protein GI | 194444371 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 0.00473792 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGATTAA CGACGAAATT CTCAGCTTTT ATCACGCTGC TCACGGGGTT AACGATCTTC
GTGACTCTGA TAGGTTGCTC GCTAAGCTTT TATAACGCCG TACAGTATAA GTATGTCAGC
CGTGTGCAGG CGACGGCAAC AGCCATTGAT ACGCACCTGG TGACCCATGA TATTGTCTCG
CTGACGCCGC AAATCGACGA GCTCATGATT GCTTCCGATA TTGTGCGTGT CGATCTGTTG
CAGGGGGAGC GCAGCGTCTA CAGCCATTCT CGCGCCAGAG GTTATCGGCC AGCCGGCACC
AGCGACATGT ATCGCGAGCT GGTCGTACCG CTGATAAAAC ATCCAGGAAT GTCGCTACGT
CTGGTTTATC AGGACCCGAT GGGTAACTAT TTTCACTCAC TGATCACCAC GGCGCCGCTG
ACGCTGGCGA TCGGTTTTAT CGTTCTGATT TTGTTTTTAT CGGTGCGCTG GCTGCAGCGG
CAGCTTTCCG GGCAGGAGCT TCTGGAAATT CGCTCCACGC GTATTCTGAA CGGCGAACGT
GGGGCGAATG TCCGCGGTTC TGTTTACGAA TGGCCGGCGC GCACCAGTAG CGCGCTTGAT
GTATTGCTTT CCGAAATTCA GTTTGCTCAC GAACAGCGTA GTCGCCTGGA CACCCTCATT
CGCTCCTACG CCGCGCAGGA CACCAAAACC GGGCTCGGTA ACCGTCTGTT TTTTGATAAC
CAACTGGCGA CGCTGCTGGA AGATCAGGAA AAAGTGGGAG TGCATGGCGT GGTGATGATG
ATCCGCTTGC CAGATTTCAA TCTTCTGCGC GACAGCCTGG GAGGCAATCA GGCGGAAGAG
CAGATGTTTA TGCTTATCAA TCTGCTATCG ACATTTATTA TGCGTTACCC AGGCTCGCTG
CTGGCGCGTT ATCACCGCAG CGACTTTGCC GTGCTGCTAC CGCATCGAAC GCTGAAAGAA
GCGGAAAGTA TTGCCGGACA ACTTTTAAAA GCTGTCGATG CGCTACCGGC TAACAAAATG
CTCGATCGTG ACGATATGGT ACATATCGGC ATTTGCGCCT GGCGCAGCGG ACAGTCCACC
GAGCAGGTGA TGGAACATGC TGAAGCCGCG GCGCGGAACG CCGCCCTGCA GGGGGGAAAT
AGCTGGGCTA TCTACGACGA CACGCTGCCG GAAAAAGGGC GCGGCAATGT GCGCTGGCGC
ACATTGATTG AGCAGATGCT GAACCGGGGC GGACCGCGAC TTTATCAAAA ACCGGCGGTC
ACGCGAGAAG GTCGCGTACA TCATCGGGAA TTGATGTGTC GCATCTATGA CGGTAAAGAA
GAGGTGAGCT CGGCGGAGTA TATGCCGATG GTGTTGCAAT TTGGTTTATC GGAAGAGTAT
GACAGATTAC AAATTAGCCG CCTGATTACG TTGCTGGGCT ACTGGCCGGA TGAAAATCTG
GCAATGCAGT TGACGGTTGA GTCGCTGATT CGTCCGCGTT TTCAGCGCTG GTTGCGCGAT
ACGTTAATGC AGTGTGAAAA ATCACAGCGA AATCGCATAA TTATTGAACT TGCGGAGGCA
GATGTTTGTC AACACATCAG CCGGTTACAA CCCATCCTTC GCTTAGTCAA TGCGCTTGGC
GTTCGGGTGG CGGTGACACA GGCGGGTTTG ACGCTGGTTA GCACGAGCTG GATTAAAGCG
CTCAATGTGG AATTACTCAA GCTGCATCCG AGTCTGGTCA GAAACATTGA GAAGCGAACG
GAAAACCAGC TTCTGGTTCA AAGTCTGGTA GAGGCCTGCG CGGGCACGCC TACGCAGGTT
TACGCGACGG GCGTCCGTTC GCGCGGCGAG TGGCAGACGC TGACAAAACG CGGCGTGGCT
GGCGGGCAGG GTGATTTTTT TGCCTCCTCC CAACTACTTG ACACAAACGT GAAAAAATAT
TCGCAAAGAT ACTCGGTTTA A
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| Protein sequence | MRLTTKFSAF ITLLTGLTIF VTLIGCSLSF YNAVQYKYVS RVQATATAID THLVTHDIVS
LTPQIDELMI ASDIVRVDLL QGERSVYSHS RARGYRPAGT SDMYRELVVP LIKHPGMSLR
LVYQDPMGNY FHSLITTAPL TLAIGFIVLI LFLSVRWLQR QLSGQELLEI RSTRILNGER
GANVRGSVYE WPARTSSALD VLLSEIQFAH EQRSRLDTLI RSYAAQDTKT GLGNRLFFDN
QLATLLEDQE KVGVHGVVMM IRLPDFNLLR DSLGGNQAEE QMFMLINLLS TFIMRYPGSL
LARYHRSDFA VLLPHRTLKE AESIAGQLLK AVDALPANKM LDRDDMVHIG ICAWRSGQST
EQVMEHAEAA ARNAALQGGN SWAIYDDTLP EKGRGNVRWR TLIEQMLNRG GPRLYQKPAV
TREGRVHHRE LMCRIYDGKE EVSSAEYMPM VLQFGLSEEY DRLQISRLIT LLGYWPDENL
AMQLTVESLI RPRFQRWLRD TLMQCEKSQR NRIIIELAEA DVCQHISRLQ PILRLVNALG
VRVAVTQAGL TLVSTSWIKA LNVELLKLHP SLVRNIEKRT ENQLLVQSLV EACAGTPTQV
YATGVRSRGE WQTLTKRGVA GGQGDFFASS QLLDTNVKKY SQRYSV
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