Gene SNSL254_A3620 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A3620 
Symbol 
ID6486681 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand- 
Start bp3507315 
End bp3507980 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content50% 
IMG OID642738895 
Producttranscriptional regulator 
Protein accessionYP_002042612 
Protein GI194446071 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.0556349 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCAGAAGC CTAAGTTAGG GAAGATTAAG CTTCTTTCAG CGAAAGAACA GGTCGCGGCA 
GTGCTGCGTA AAGCGATTCT TTCGAGGGAG TTAGTGGAAG GGCAGGAGAT TACGTTAGAA 
GGCATTGCCG GAATGGTCGG CGTGTCGAGT ATGCCAGTGC GCGAGGCGTT TCAGATTCTG 
GCGGCGGATG GGCTGATAAA AGTGCGCCCT AATAAAGGGG CGGTGGTGTT GGGCATCAAT 
GAACAAACGA TCCGTGAACA CTATGAAATT CGCGCGCTGT TAGAAAGTGA GGCGGTGGCT 
AAAGCTTCTC GTCCTGGCAC CGATATCTCG CGGATAGCCC AGGTGCATTA TGCCGCTGAA 
AAGGCTCTCG CGGAAAATAA CTCGGCGGAA TACTCCGACC TGAATCAGGC ATTTCATATG 
GAAATATGGA ATGTTGCTGG CAACGAAAAA ATGAAAATGT TGCTCTGTAA TATGTGGAAC 
GGCCTGTCGA TGGGCCATAA GGTCACCGAA GAAGAGTATG CCGTGATTTC CATTCAGGAA 
CATAAAAGTA TTCTGCAAGC TCTTGAACTT CATGATGAAA CATTGGCACG CCAGCGCATG 
CGCGAACACA TTATTCGCTC AATGGAGAAT ATGCTGACCC GCTATGTTGG TGACCCTTCT 
GCCTGA
 
Protein sequence
MQKPKLGKIK LLSAKEQVAA VLRKAILSRE LVEGQEITLE GIAGMVGVSS MPVREAFQIL 
AADGLIKVRP NKGAVVLGIN EQTIREHYEI RALLESEAVA KASRPGTDIS RIAQVHYAAE 
KALAENNSAE YSDLNQAFHM EIWNVAGNEK MKMLLCNMWN GLSMGHKVTE EEYAVISIQE 
HKSILQALEL HDETLARQRM REHIIRSMEN MLTRYVGDPS A