| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3363 |
|---|
| Symbol | speC |
|---|
| ID | 6483428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 3262107 |
|---|
| End bp | 3264242 |
|---|
| Gene Length | 2136 bp |
|---|
| Protein Length | 711 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642738654 |
|---|
| Product | ornithine decarboxylase |
|---|
| Protein accession | YP_002042375 |
|---|
| Protein GI | 194445302 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.134652 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 0.661844 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAA TGAATATTGC CGCCAGCGGT GAACTCATCC CCCGTCTATC CACCCACCGA
AACGTAGTGG CGCTGGACAG TACCGACTTT ACCGATGTGG CCGCAGTCGT CATTACCACT
GCCGACAGCC GTAGCGGTAT TCTGGCGTTG CTTAAACGCA CCGGTTTTCA CCTGCCGGTG
TTTATGCTTG CGGATGAACC CGTTAGCGCG CCTGTCGGCG TTACGGCGGT AATAGGCGGG
AACGCGCAGG AATGGCTGGA GCTGGAAAAC GCTGCCTGTC GCTACGAAGC GGAACTTCTG
CCGCCCTTTT ATGGCACCCT GACCCAGTAT GTCGACATGG GGAATAGTAC CTTTGCTTGC
CCGGGGCACC AGCATGGCGA GTTTTTTAGA AAACATCCCG CAGGCCGTCA TTTTTATGAC
TTTTTTGGTG AAAACCTGTT TCGTGCGGAT ATGTGTAACG CCGATGTGAA ACTTGGCGAT
CTGCTAATAC ATGAAGGTTC TGCCAAACAC GCGCAGAAAT TTGCGGCAAA AGTGTTTAAT
GCGGATAAAA CCTACTTTGT GCTGAATGGA ACTTCGGCGG CGAATAAAGT GGTCACCAAC
GCCCTGCTGA CGCGCGGCGA TCTGGTGCTG TTTGATCGTA ATAATCACAA ATCCAACCAC
CACGGCGCCC TGATTCAGGC CGGGGCGACG CCGGTCTATC TTGAAGCGGC GCGTAACCCG
TTTGGTTTTA TCGGTGGTAT TGATGCGCAC TGTTTTGATG AAACGTACCT GCGCGACCAG
ATTCGTGACG TGATGCCGGA AAGCGCCGAT GCGCTGCGTC CGTTCCGCCT GGCGATCATT
CAGCTGGGTA CCTATGACGG CACTATTTAC AACGCCCGTC AGGTGGTGGA TAAAATCGGG
CATCTCTGCG ATTACATTCT GTTTGACTCC GCGTGGGGAG GCTATGAGCA GTTTATCAAT
ATGATGGCGG ATACCTCGCC GTTGCGGCTG GAGCTTAATG AAAACGAACC TGGGATCTTT
GTGACCCAAT CGGTACATAA GCAACAGGCG GGGTTCTCAC AAACCTCGCA GATCCACAAA
AAAGATAACC ATATTCGCGG CCAGGCGCGT TTTTGCCCGC ACAAACGCCT GAACAACGCC
TTCATGTTGC ATGCTTCAAC CAGTCCGTTC TACCCGCTGT TTGCGGCGCT GGATGTCAAT
GCCAAAATCC ACGAAGGGGA GAGCGGTCGC CGCCTGTGGG CGGAGTGCGT TGCGCTGGGC
ATTGACGCGC GTAAAGCCAT TCTCGCCCGT TGCAAACTGC TTCAGCCCTT TATCCCACTG
GTGGTTGACG GCAAGCCGTG GCAGGCATAT CCGACGGAGA CCATTGCCAG CAATCGTCGT
TTCTTCAGTT TTGAGCCCGG GGCGAAATGG CATGGCTTTG AGGGTTATGC GGATGACCAG
TATTTTGTCG ACCCCTGTAA ACTGTTACTG ACCACGCCAG GTATTGATGC CGATAGCGGG
CAGTACACCG AATTCGGCAT CCCGGCGACC ATTCTCGCCC ACTATCTGCG TGAGAACGGT
ATTGTGCCTG AGAAATGCGA TCTCAACTCG ATTCTGTTCT TGCTGACACC CGCCGAGAGC
GAAGAGAAAC TGGCGCGGCT GGTCGCGATG CTGGCGCAAT TTGAACGGCA CATTGAAGAC
GATACGCCGC TTGCGGATGT ATTGCCGACG GTTTTTCAGA AATACCCGGT GCGCTACCGC
GATTACACCC TGCGTGAGCT ATGTCAGGAG ATGCACAATC TGTACGTTAG CTTTGACGTT
AAGGATCTGC AAAAAGCGAT GTTCCGCAAA GAAAGCCTGC CGCATGTGGC GATGAACCCA
CAGGACGCCA ACAGCGCCTT TATTCGCGGC GATGTAGAAC TGGTGCGTAT CAGCGAGGCG
GGCGGGCGTA TTGCTGCCGA GGGGGCATTG CCATACCCGC CGGGCGTACT GTGCGTGGTG
CCCGGGGAGA TTTGGGGCGG CGCGGCGCAG CGTTATTTTT TGGCGCTGGA AGAGGGCATC
AATCTGTTGC CCGGTTTTTC GCCGGAATTG CAGGGGGTAT ATAGCGAGAC CGATGCCGAT
GGAATTCAAC GCTTGTACGG ATATGTTTTA AAGTAA
|
|---|
| Protein sequence | MKSMNIAASG ELIPRLSTHR NVVALDSTDF TDVAAVVITT ADSRSGILAL LKRTGFHLPV
FMLADEPVSA PVGVTAVIGG NAQEWLELEN AACRYEAELL PPFYGTLTQY VDMGNSTFAC
PGHQHGEFFR KHPAGRHFYD FFGENLFRAD MCNADVKLGD LLIHEGSAKH AQKFAAKVFN
ADKTYFVLNG TSAANKVVTN ALLTRGDLVL FDRNNHKSNH HGALIQAGAT PVYLEAARNP
FGFIGGIDAH CFDETYLRDQ IRDVMPESAD ALRPFRLAII QLGTYDGTIY NARQVVDKIG
HLCDYILFDS AWGGYEQFIN MMADTSPLRL ELNENEPGIF VTQSVHKQQA GFSQTSQIHK
KDNHIRGQAR FCPHKRLNNA FMLHASTSPF YPLFAALDVN AKIHEGESGR RLWAECVALG
IDARKAILAR CKLLQPFIPL VVDGKPWQAY PTETIASNRR FFSFEPGAKW HGFEGYADDQ
YFVDPCKLLL TTPGIDADSG QYTEFGIPAT ILAHYLRENG IVPEKCDLNS ILFLLTPAES
EEKLARLVAM LAQFERHIED DTPLADVLPT VFQKYPVRYR DYTLRELCQE MHNLYVSFDV
KDLQKAMFRK ESLPHVAMNP QDANSAFIRG DVELVRISEA GGRIAAEGAL PYPPGVLCVV
PGEIWGGAAQ RYFLALEEGI NLLPGFSPEL QGVYSETDAD GIQRLYGYVL K
|
|---|
| |