Gene SNSL254_A3207 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A3207 
SymbolgcvA 
ID6486721 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp3118610 
End bp3119527 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content51% 
IMG OID642738510 
ProductDNA-binding transcriptional activator GcvA 
Protein accessionYP_002042234 
Protein GI194444978 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00274599 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones92 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAAAAC GATTACCTCC TTTAAATGCG TTACGCGTTT TTGATGCTGC CGCGCGCCAT 
TTGAGCTTTA CGCGAGCAGC GGAAGAACTT TTTGTGACGC AGGCCGCAGT AAGCCACCAA
ATTAAGTCAC TTGAGGATTT TTTGGGGCTA AAACTGTTCC GCCGCCGCAA TCGTTCGCTG
CTGCTGACGG AAGAAGGCCA AAGCTATTTT CTCGACATTA AAGAGATATT TTCCCAGCTC
ACGGAAGCAA CGCGTAAGCT CCAGGCGCGC AGTGCCAAAG GGGCGCTGAC GGTGAGTTTA
CCGCCCAGTT TTGCCATCCA GTGGCTGGTG CCCAGGCTCT CCAGCTTTAA CTCAGCTTAT
CCGGGAATTG ACGTTCGGAT ACAAGCCGTT GACCGTCAGG AAGATAAACT GGCAGACGAT
GTCGATGTCG CGATTTTTTA TGGCCGGGGA AACTGGCCGG GCTTGCGCGT CGAAAAATTA
TACGCAGAAT ATTTACTGCC CGTCTGTTCT CCTTTATTAC TCACAGGCGA AAAACCGTTA
AAAACGCCGG AAGATCTGGC GAAACACACG TTATTGCACG ATGCCTCCCG GCGTGACTGG
CAGGCCTATA CTCGTCAGTT AGGGCTCAAC CATATTAACG TTCAGCAAGG GCCGATATTT
AGCCACAGCG CGATGGTGCT ACAGGCCGCT ATTCACGGAC AGGGGATCGC GCTGGCGAAT
AATGTTATGG CGCAGTCGGA AATTGAAGCC GGGCGACTGG TGTGTCCATT TAACGATGTT
CTGGTGAGTA AGAATGCTTT TTATCTGGTT TGTCATGACA GCCAGGCAGA ACTGGGTAAA
ATAGCCGCCT TCCGTCAGTG GATTTTGGCG AAGGCGGCGA CGGAGCAAGA AAAATTCCGT
TTTCGTTACG AACAATAA
 
Protein sequence
MSKRLPPLNA LRVFDAAARH LSFTRAAEEL FVTQAAVSHQ IKSLEDFLGL KLFRRRNRSL 
LLTEEGQSYF LDIKEIFSQL TEATRKLQAR SAKGALTVSL PPSFAIQWLV PRLSSFNSAY
PGIDVRIQAV DRQEDKLADD VDVAIFYGRG NWPGLRVEKL YAEYLLPVCS PLLLTGEKPL
KTPEDLAKHT LLHDASRRDW QAYTRQLGLN HINVQQGPIF SHSAMVLQAA IHGQGIALAN
NVMAQSEIEA GRLVCPFNDV LVSKNAFYLV CHDSQAELGK IAAFRQWILA KAATEQEKFR
FRYEQ