| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3082 |
|---|
| Symbol | |
|---|
| ID | 6483729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 2998039 |
|---|
| End bp | 2998521 |
|---|
| Gene Length | 483 bp |
|---|
| Protein Length | 160 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 642738396 |
|---|
| Product | cell invasion protein |
|---|
| Protein accession | YP_002042120 |
|---|
| Protein GI | 194443316 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.0000116628 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCATTATT TTTTTATCAT CGTAATCTGG TTGCTTAGCA TAAATACGGC ATGGGCTGAT
TGCTGGCTTC AGGCTGAAAA AATGTTCAAT ATTGAATCCG AACTACTTTA CGCTATCGCC
CAGCAGGAAT CGGCGATGAA ACCTGGCGCC ATTGGTCATA ACCGAGATGG TTCAACCGAT
CTTGGCCTGA TGCAAATTAA CAGCTTCCAT ATGAAAAGGC TGAAAAAAAT GGGGATTAGT
GAAAAACAGT TGTTACAGGA CCCCTGCATT TCTGTCATTG TGGGCGCTTC CATTTTATCA
GATATGATGA AAATCTACGG TTATAGCTGG GAGGCCGTTG GCGCTTATAA TGCCGGGACG
TCGCCGAAAC GATCGGATAT AAGGAAACGT TATGCTAAAA AAATTTGGGA GAATTACAGA
AAATTAAAAG GAATGTCAGC AGAAGAGAAA AACAAAAGAC TTTCTATCGC GTCAAACAAA
TAA
|
|---|
| Protein sequence | MHYFFIIVIW LLSINTAWAD CWLQAEKMFN IESELLYAIA QQESAMKPGA IGHNRDGSTD
LGLMQINSFH MKRLKKMGIS EKQLLQDPCI SVIVGASILS DMMKIYGYSW EAVGAYNAGT
SPKRSDIRKR YAKKIWENYR KLKGMSAEEK NKRLSIASNK
|
|---|
| |