Gene SNSL254_A3054 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A3054 
SymbolhycC 
ID6486741 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp2973048 
End bp2974874 
Gene Length1827 bp 
Protein Length608 aa 
Translation table11 
GC content61% 
IMG OID642738369 
Productformate hydrogenlyase subunit 3 
Protein accessionYP_002042093 
Protein GI194443059 
COG category[C] Energy production and conversion
[P] Inorganic ion transport and metabolism 
COG ID[COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.920212 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones57 
Fosmid unclonability p-value0.22505 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTCAC TTTCACTGAT TACTAGCGGC GTCGCGTGGT TTGCCGCCGC CGCCGTTCTG 
GCGTTTCTGT TTTCGTTTCA TAAAGCGCTG AGCGGCTGGA TTGCCGGTAT CGGCGGCGCG
GTCGGCAGCC TGTGTACGGC TGGTGCGGGG TTCACCGCAC TGACCAGCGC CGTTACGGTG
AGCGGCGTGA TGCCGTTTAC CGGCCACATG CTGCAAATTA CGCCGCTGAA TGCTATCTGG
CTGATTACGC TGGGGCTGTG CGGTCTGTTC GTCAGCCTGT TCAATATCGA CTGGCATCGC
CATCCACAGG TAAAAGCCAA CGGACTGTTG ATCAACCTGC TGATGGCGGC AGCCGTCTGC
GCCGTGGTCG CCAGTAATCT GGGGACGATG GTGGTGATGG CGGAAATCAT GGCGCTCTGC
GCCGTGTTCC TCACCGGCGG TAGCAAAGAG GGCAAACTGT GGTTTGCGCT GGGCCGTCTC
GGTACGCTGC TGCTGGCAAT CGCCTGTTGG CTGGTGTGGC AGCGCTACGG CACGCTGGAT
CTGGGGCTGC TGGATCAACG CGCTCAGCAA CTGCCGCTGG GCTCCGATAT CTGGCTGCTC
GGCGTTATCG GTTTTGGTCT GCTGGCCGGG ATTATCCCGC TACACGGTTG GGTGCCGCAG
GCGCACGCCA ACGCCAGCGC TCCCGCCGCC GCGCTGTTCT CGACCGTGGT GATGAAAATC
GGGGTGCTGG GTATCCTCAC GCTATCTCTG CTTGGCGGCA ATGCGCCGCT GTGGTGGGGC
GTGGCGCTGT TGGTGCTAGG GATGATCACC GCCTTTGTCG GCGGTCTGTA CGCGCTGATG
GAGCATAACA TTCAGCGCCT GTTGGCCTAT CACACGCTGG AAAATATCGG CATCATTTTG
CTCGGTCTGG GCGCAGGCGT TACCGGGATT GCTCTCAATC AGCCGGTACT GATCGCGCTG
GGTCTGACCG GCGGGCTCTA TCACCTGCTG AACCATAGCC TGTTCAAAAG CGTGCTGTTT
CTGGGCGCGG GCAGCATCTG GTTCCGTACC GGTCATCGCG ATATCGAAAA ACTGGGCGGT
ATTGGTAAAC GGATGCCGGT TATTTCTATC GCCATGCTGG TCGGTCTGAT GGCGATGGCT
GCGCTGCCGC CGCTGAACGG CTTTGCCGGC GAGTGGGTGA TTTACCAGTC CTTCTTCAAA
CTGGGCAACA GCGGCGCATT TGTTGGTCGT CTGTTAGGAC CGCTGCTGGC GGTTGGCCTG
GCGATTACCG GCGCGCTGGC GGTGATGTGT ATGGCGAAAG TGTATGGCGT GACGTTCCTT
GGCGCGCCGC GCACGAAGGA AGCTGAAAAT GCCAGCTGCG CGCCGATCCT GATGGGCGTC
AGCGTGGTGG CATTGGCGAT TTGCTGCGTA CTGGGCGGGG TTGCCGCGCC GTGGCTGCTG
CCGATGATTT CCACTGCGGT ACCGTTGCCG CTGGAAACCG CGCACACCAC CGTATCGCAG
CCGATGATCA CGCTGCTGTT GGTCGCCTGT CCGCTACTGC CGTTCATCAT TATGGCAATG
TTCAAAGGCA ACCGTCTGCC GTCGCGTTCT CGCGGCGCGG CCTGGGTGTG CGGCTACGAC
CATGAGCAGT CGATGGTGAT TACCGCGCAC GGTTTTGCCA TGCCGGTGAA AGAGGCCTTT
GCCCCGGTAC TCAAATTGCG TAAATGGCTG AACCCGGTAT CGCTGGTGCC GGGCTGGCAG
AACGCGGCGG CCGCGGTGCT GTTCCGTCGT CTGGCGCTGA TTGAGCTGGC GGTGCTGGTG
GTGATTGTGG TTTCACGAGG AGCCTGA
 
Protein sequence
MSSLSLITSG VAWFAAAAVL AFLFSFHKAL SGWIAGIGGA VGSLCTAGAG FTALTSAVTV 
SGVMPFTGHM LQITPLNAIW LITLGLCGLF VSLFNIDWHR HPQVKANGLL INLLMAAAVC
AVVASNLGTM VVMAEIMALC AVFLTGGSKE GKLWFALGRL GTLLLAIACW LVWQRYGTLD
LGLLDQRAQQ LPLGSDIWLL GVIGFGLLAG IIPLHGWVPQ AHANASAPAA ALFSTVVMKI
GVLGILTLSL LGGNAPLWWG VALLVLGMIT AFVGGLYALM EHNIQRLLAY HTLENIGIIL
LGLGAGVTGI ALNQPVLIAL GLTGGLYHLL NHSLFKSVLF LGAGSIWFRT GHRDIEKLGG
IGKRMPVISI AMLVGLMAMA ALPPLNGFAG EWVIYQSFFK LGNSGAFVGR LLGPLLAVGL
AITGALAVMC MAKVYGVTFL GAPRTKEAEN ASCAPILMGV SVVALAICCV LGGVAAPWLL
PMISTAVPLP LETAHTTVSQ PMITLLLVAC PLLPFIIMAM FKGNRLPSRS RGAAWVCGYD
HEQSMVITAH GFAMPVKEAF APVLKLRKWL NPVSLVPGWQ NAAAAVLFRR LALIELAVLV
VIVVSRGA