| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3003 |
|---|
| Symbol | |
|---|
| ID | 6483090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 2927792 |
|---|
| End bp | 2928226 |
|---|
| Gene Length | 435 bp |
|---|
| Protein Length | 144 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642738319 |
|---|
| Product | alkylhydroperoxidase AhpD family core domain protein |
|---|
| Protein accession | YP_002042048 |
|---|
| Protein GI | 194442609 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 0.0047955 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATGACGA CGTTACGCCA ACCCTATTAT GAACTGAGCC CGGAGGTTTA CAGCGCTCTG
GTGCAGGCGA AAAACGCGCT GGAAAAGAGC ACGCTTGACC CCACGCTGAT GGAGCTGATT
TACCTGCGTG TTTCGCAAAT AAATGGTTGT GCATTTTGCC TGGAGATGCA CAGTAAAGCG
CTGCGTAAGG CTGGCGTAAA TCAAGCTAAA TTAGATGCGC TGGCAGGATG GCGGGTAAGC
CACCATTTCA GCGAGCAAGA GTGCGCGGCG TTAGCCTGGG CGGAATCGGT GACGCACATT
GCTGAGACCC ACGCCGAAGA TAATGTTTAC CTGCCGCTGC TCGATCATTT CAGCGCGCGT
GAAATCAGCG ATCTGACCTT CGCCATCGGT TTAATGAACT GCTTTAACCG TCTGGCGATC
GGTATGCGAA TGTGA
|
|---|
| Protein sequence | MMTTLRQPYY ELSPEVYSAL VQAKNALEKS TLDPTLMELI YLRVSQINGC AFCLEMHSKA
LRKAGVNQAK LDALAGWRVS HHFSEQECAA LAWAESVTHI AETHAEDNVY LPLLDHFSAR
EISDLTFAIG LMNCFNRLAI GMRM
|
|---|
| |