Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A2989 |
Symbol | gabT |
ID | 6484830 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 2918238 |
End bp | 2919521 |
Gene Length | 1284 bp |
Protein Length | 427 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642738305 |
Product | 4-aminobutyrate aminotransferase |
Protein accession | YP_002042034 |
Protein GI | 194446692 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 55 |
Fosmid unclonability p-value | 0.0883038 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATACCA ATAACGCTTT AATGCAGCGC CGTCATAACG CCGTTCCTCG CGGCGTGGGC CAGATTCACC CAATTTTCGC CGAGCGGGCG GAAAATTGTC GGGTCTGGGA TGTCGAAGGC CGTGAGTATC TCGATTTCGC GGGCGGCATT GCCGTCCTGA ACACCGGTCA TTTACATCCG GGCATTGTTT CAGCGGTCGA AGCGCAGTTG AAGAAATTGT CGCATACCTG TTTTCAGGTG CTGGCCTATG AACCGTACCT GGCGTTGTGC GAACGCATGA ACCAGAAGGT ACCGGGCGAT TTCGCCAAAA AAACGTTGCT GGTCACGACC GGTTCAGAAG CGGTTGAAAA CGCGGTGAAA ATCGCCCGCG CGGCGACAAA ACGCAGCGGC GCTATCGCGT TTAGCGGCGC TTACCACGGT CGTACCCACT ACACGCTCTC TCTGACCGGG AAAGTACACC CGTACTCTGC TGGTATGGGA TTGATGCCAG GCCATGTCTA CCGCGCGCTT TATCCTTGCC CGCTACACAA CATCAGCGAC GACGACGCGA TCGCCAGCAT TGAACGCATC TTTAAAAATG ATGCCGCGCC GGAAGATATC GCCGCCATTA TTATTGAGCC GGTACAGGGC GAAGGCGGAT TTTACGCCGC CTCTCCCGCG TTTATGCAGC GACTGCGCGC GCTATGCGAC CAACACGGCA TTATGTTGAT TGCCGACGAA GTGCAAAGCG GCGCGGGCCG GACCGGTACG CTGTTCGCCA TGGAACAGAT GGGCGTTGCG GCAGATATTA CCACGTTTGC GAAATCGATC GCCGGCGGCT TTCCGCTGGC AGGCGTTACC GGCCGGGCAG ACGTGATGGA CGCTATCGCG CCGGGCGGTC TGGGCGGCAC CTATGCCGGA AACCCGATTG CCTGCGCCGC CGCGCTGGCG GTACTGGACA TTTTCGAGCA GGAAAATCTA CTGCAAAAGG CAAATACGCT TGGCAACACG CTGCGCGATG GCCTGATGGA GATAGCGGAA ACGCACCGTG AGATTGGCGA CGTGCGCGGA CTGGGCGCCA TGATCGCCAT TGAGTTGTTC GAAAATGGCG ACCCCGGCAA ACCGAACGCG ACTCTGACCG CCGACATTGT GGCCCGCGCC CGCGAGAAAG GGTTAATTCT GCTCTCCTGC GGTCCTTACT ACAACATCTT GCGCATCCTC GTTCCACTCA CTATTGAGGC CTTGCAGATT CGGCAAGGCC TGGAGATTAT CGCCCAGTGC TTTGATGAGG CGAAACAAGC GTAA
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Protein sequence | MNTNNALMQR RHNAVPRGVG QIHPIFAERA ENCRVWDVEG REYLDFAGGI AVLNTGHLHP GIVSAVEAQL KKLSHTCFQV LAYEPYLALC ERMNQKVPGD FAKKTLLVTT GSEAVENAVK IARAATKRSG AIAFSGAYHG RTHYTLSLTG KVHPYSAGMG LMPGHVYRAL YPCPLHNISD DDAIASIERI FKNDAAPEDI AAIIIEPVQG EGGFYAASPA FMQRLRALCD QHGIMLIADE VQSGAGRTGT LFAMEQMGVA ADITTFAKSI AGGFPLAGVT GRADVMDAIA PGGLGGTYAG NPIACAAALA VLDIFEQENL LQKANTLGNT LRDGLMEIAE THREIGDVRG LGAMIAIELF ENGDPGKPNA TLTADIVARA REKGLILLSC GPYYNILRIL VPLTIEALQI RQGLEIIAQC FDEAKQA
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