| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A2907 |
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| Symbol | |
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| ID | 6486264 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 2844841 |
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| End bp | 2846031 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642738226 |
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| Product | type I secretion membrane fusion protein HlyD family |
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| Protein accession | YP_002041955 |
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| Protein GI | 194446689 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.891206 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 0.048093 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATCA ATCAGCATGA TGCCGCGATG GACGATCCCG ATATTCAGCG TGAACGGGCG
TTTTCCGGCG CGGGTCGTAT TGTTCTGATC TGCTCACTGT TATTTCTCAT TCTCGGCATC
TGGGCGTGGT TTGGCCGACT GGATGAGGTT TCCACCGGCA ACGGGAAAGT GATCCCCAGT
TCACGCGAAC AGGTTCTGCA GTCGCTGGAT GGCGGCATTC TGGCGCAGTT GACGGTGCGG
GAAGGCGACA GAGTTCAGGC TAACCAGATT GTCGCCCGGC TTGATCCGAC GCGTCTGGCG
TCCAATGTGG GTGAAAGTGC GGCAAAATAT CGCGCTTCAC TCGCCTCCAG CGCACGGTTA
ACCGCGGAAG TCAGCGACTT ACCTCTCGCC TTTCCCGCTG AGCTGAACGG CTGGCCGGAT
CTGATTGCCG CAGAGACGCG TCTCTATAAA AGCCGCCGCG CGCAGCTGGC CGATACCGAA
GCCGAGCTAC GGGATGCGCT GGCGTCGGTT AATAAAGAGC TGACCATTAC CCAGCGGCTG
GAGAAAAGCG GCGCGGCCAG TCATGTTGAA GTGCTACGCC TGCAACGACA AAAAAGCGAT
TTAGGCTTAA AAATTACCGA TCTGCGCTCA CAATATTATG TGCAGGCACG CGAAGCGTTA
TCGAAAGCGA ACGCTGAGGT CGATATGCTC TCCGCCATTT TAAAAGGACG CGAGGATTCC
GTCACCCGCC TTACCGTGCG TTCACCGGTA CGCGGCATTG TTAAAAATAT CCAGGTCACG
ACGATTGGCG GCGTGATCCC GCCTAACGGC GAGATGATGG AGATAGTGCC GGTAGACGAT
CGTCTGCTGA TTGAAACCCG CCTTTCGCCG CGTGATATCG CCTTTATTCA TCCCGGCCAA
CGCGCATTGG TTAAAATTAC TGCTTACGAT TACGCCATTT ACGGCGGGCT TGACGGCGTG
GTGGAGACCA TTTCACCGGA TACCATTCAG GATAAAGTGA AACCGGAAAT TTTCTACTAT
CGCGTGTTTA TCCGCACCCA CCAGGACTAT CTACAAAATA AATCAGGACG CCGTTTTTCG
ATTGTTCCAG GCATGATCGC CACGGTGGAT ATCAAAACCG GTGAAAAAAC CATTGTCGAC
TATTTAATCA AACCGTTTAA TCGCGCGAAA GAAGCGCTGC GCGAGCGGTA A
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| Protein sequence | MKINQHDAAM DDPDIQRERA FSGAGRIVLI CSLLFLILGI WAWFGRLDEV STGNGKVIPS
SREQVLQSLD GGILAQLTVR EGDRVQANQI VARLDPTRLA SNVGESAAKY RASLASSARL
TAEVSDLPLA FPAELNGWPD LIAAETRLYK SRRAQLADTE AELRDALASV NKELTITQRL
EKSGAASHVE VLRLQRQKSD LGLKITDLRS QYYVQAREAL SKANAEVDML SAILKGREDS
VTRLTVRSPV RGIVKNIQVT TIGGVIPPNG EMMEIVPVDD RLLIETRLSP RDIAFIHPGQ
RALVKITAYD YAIYGGLDGV VETISPDTIQ DKVKPEIFYY RVFIRTHQDY LQNKSGRRFS
IVPGMIATVD IKTGEKTIVD YLIKPFNRAK EALRER
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