Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A2905 |
Symbol | |
ID | 6484015 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 2841274 |
End bp | 2842683 |
Gene Length | 1410 bp |
Protein Length | 469 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642738224 |
Product | type I secretion outer membrane protein TolC family |
Protein accession | YP_002041953 |
Protein GI | 194442366 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 62 |
Fosmid unclonability p-value | 0.488456 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGAAGAG TCGCACCTGT CGCCATCGTA CTGGCATTTG CTTTGTTTCA TCACCAGCCC CGGGGCGCAG AATCGCTGCC AATTATCACA TCCGAAGGAT TAGCAACGGA CCAGATGCTT CCTTCGCTGG ATGGCTCCGC CGCTGAGTTG CCGCTCAGCG CCGCCGCGCC GGGCAACCTG ACGCTCAATG ACGCGGTCAA TCGCGCCGTT AACTGGCATC CTTCTATTCG CGAAGCCGTC GGCAAACTGC TCGCACAGAA TGAACAAATA GAGGTCGCCA AATCGAAATA TTATCCGCAA GTCAGTGCTG GCGTGAACAA TGGGTACAGC AATACCTACA CCGATCACGG GTATAGCCCC TCGCTGGTGC TGTCGGTATC GCAAATGCTT TATGACTTCG GCAAAGTGGC AAGCCAGGTT CGCGCCGAAA CCGCAGGCGC AGCACAGCAA CAGGCCAACG TGTTGCTCAG TATTGATACC GTCGCGCATG AAACCGCCAA CGCCATTGTA CAAACGCAGA GCTGGCAGCA AATGGTAGAA GCAGCGGAAG AACAGCTCAC CGCGCTGGAC GGCATCGGTA AACTTATCCG GCAGCGCAGC GATGAAGGCG CCACGTCGCT ATCTGACGTA GTGCAAACCG AAGCCAGAAT CGAATCCGCC CGCTCGCAAC TGGCGCAGTA TCAGGCCAAT CTCGACAGTG CGAAAGCCTC ACTGATGAGC TGGCTGGGCT GGAATTCGCT TAACGGCATC AATAATGACT TCCCGGCGAA ACTTGCTCGC AGCTGTGAGA CGGCGACTCC CGACGATCGA CTGGTGCCCG CGGTACTGGC CGCCTGGGCG CAGGCCAACG TTGCGCGGGC GAATCTGGAC TATGCCAGCG CGCAAATGAC GCCGACGATT TCGCTCGAAC CTTCTGTACA ACATTATCTT AATGATAAAT ATCCCAGTCA TGAAGTGCTG GATAAAACCC AGTATTCCAC CTGGGTAAAA GTTGAGATGC CGCTTTATCA GGGCGGAGGG CTGACTGCCC GACGCAACGC CGCCAGCCAT GCGGTAGACG CGGCTCAGTC GACCATTCAG CGCACCCGGC TTGATGTCCG CCAGAAACTG ATGGAGGCGC GCAGCCAGGC AATGAGTCTT GCCAGCGCGT TACAAATCCT TCGTCGGCAA CAGCAGCTTA GCGAACGCAC GCGCGAACTG TATCAGCAGC AATACCTTGA CCTCGGTTCC CGCCCGTTGC TCGACGTGCT TAATGCGGAG CAGGAAGTTT ACCAGGCGCG TTTTGCCGAA CTGCAAACGG AAAGCCAGTT GCATCAGTTG CAACTGAACT GTCTGTATAA CACCGGCGCG CTTCGTCAGG CGTTCGCGTT AAATCATCGC AGCATTCAAT CCGTGGAGAT CCAGCCATGA
|
Protein sequence | MGRVAPVAIV LAFALFHHQP RGAESLPIIT SEGLATDQML PSLDGSAAEL PLSAAAPGNL TLNDAVNRAV NWHPSIREAV GKLLAQNEQI EVAKSKYYPQ VSAGVNNGYS NTYTDHGYSP SLVLSVSQML YDFGKVASQV RAETAGAAQQ QANVLLSIDT VAHETANAIV QTQSWQQMVE AAEEQLTALD GIGKLIRQRS DEGATSLSDV VQTEARIESA RSQLAQYQAN LDSAKASLMS WLGWNSLNGI NNDFPAKLAR SCETATPDDR LVPAVLAAWA QANVARANLD YASAQMTPTI SLEPSVQHYL NDKYPSHEVL DKTQYSTWVK VEMPLYQGGG LTARRNAASH AVDAAQSTIQ RTRLDVRQKL MEARSQAMSL ASALQILRRQ QQLSERTREL YQQQYLDLGS RPLLDVLNAE QEVYQARFAE LQTESQLHQL QLNCLYNTGA LRQAFALNHR SIQSVEIQP
|
| |