| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A2877 |
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| Symbol | rluD |
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| ID | 6485775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 2808072 |
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| End bp | 2809052 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 642738197 |
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| Product | 23S rRNA pseudouridine synthase D |
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| Protein accession | YP_002041926 |
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| Protein GI | 194446496 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 65 |
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| Fosmid unclonability p-value | 0.673786 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACAAC GAGTACAACT CACCGCAACG GTCTCCGAAA ACCAACTCGG TCAACGCTTA
GATCAGGCTT TGGCCGAAAT GTTCCCGGAT TATTCACGTT CGCGTATAAA AGAATGGATT
TTGAATCAGC GCGTGTTGGT CAATGGTCAA CTTTGCGATA AGCCAAAAGA AAAAGTGTTA
GGCGGCGAGC GGGTGGCTAT TGATGCGGAG ATCGACGAAG AGATTCGTTT TGAAGCGCAG
GATATCCCGT TAGATATTGT TTATGAAGAT GACGATATTC TGGTTATCAA CAAACCACGC
GATCTGGTGG TACATCCTGG CGCGGGTAAC CCGGACGGTA CGGTACTGAA CGCGTTGCTA
CATTATTATC CGCCGATTGC GGATGTTCCG CGCGCGGGCA TTGTGCATCG TCTGGATAAG
GACACGACGG GGCTGATGGT GGTGGCCAAA ACCGTTCCGG CGCAAACGCG CCTGGTGGAG
TCTTTGCAGC TGCGCGAGAT TACCCGCGAA TATGAAGCGG TCGCGATCGG ACATATGACG
GCGGGAGGAA CGGTGAATGA ACCCATCAGT CGTCACCCGA CCAAACGTAC CCATATGTCG
GTGCATCCTA TGGGCAAACC GGCGGTGACC CACTACCGCA TTATGGAACA TTTCCGTGTG
CACACGCGTC TTAGGTTGCG TCTGGAGACC GGGCGTACGC ACCAGATCCG CGTGCATATG
GCGCATATTA CGCATCCGTT AGTGGGCGAT CAGGTCTACG GTGGTCGTCC ACGTCCACCG
AAAGGCGCAT CGGAAGAATT TATTTCCACG CTGCGTAAGT TTGACCGCCA GGCGCTTCAT
GCAACGATGC TGCGTCTCTA CCATCCTGTA TCGGGTATCG AAATGGAGTG GCACGCGCCG
ATTCCACAAG ATATGGTGGA CCTTATCGAT GCGATGCGCG CCGATTTTGA AGATCATAAA
GATGATGTGG ACTGGTTATG A
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| Protein sequence | MAQRVQLTAT VSENQLGQRL DQALAEMFPD YSRSRIKEWI LNQRVLVNGQ LCDKPKEKVL
GGERVAIDAE IDEEIRFEAQ DIPLDIVYED DDILVINKPR DLVVHPGAGN PDGTVLNALL
HYYPPIADVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVE SLQLREITRE YEAVAIGHMT
AGGTVNEPIS RHPTKRTHMS VHPMGKPAVT HYRIMEHFRV HTRLRLRLET GRTHQIRVHM
AHITHPLVGD QVYGGRPRPP KGASEEFIST LRKFDRQALH ATMLRLYHPV SGIEMEWHAP
IPQDMVDLID AMRADFEDHK DDVDWL
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