Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A2759 |
Symbol | cadB |
ID | 6484195 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 2698586 |
End bp | 2699917 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642738087 |
Product | lysine/cadaverine antiporter |
Protein accession | YP_002041821 |
Protein GI | 194443544 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0531] Amino acid transporters |
TIGRFAM ID | [TIGR00905] transporter, basic amino acid/polyamine antiporter (APA) family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.420004 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 87 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTCTG TCAAAAAGAT CGGGCTATTT GCCTGTACTG GCGTCGTTGC CGGTAATATG ATGGGGAGCG GGATTGCATT ATTACCCGCC AACCTTGCCA GTATTGGTGG CATTGCCATC TGGGGCTGGG TAATTTCTAT TATTGGGGCA ATGTCGCTGG CTTATGTTTA TGCGAGGCTG GCAACCAAAA ACCCTCAACA GGGTGGCCCT ATCGCTTATG CTGGGGAAAT ATCTCCGGCG TTTGGTTTCC AGACCGGCGT TCTTTATTAT CACGCAAACT GGATTGGTAA CTTAGCCATC GGTATTACCG CGGTTTCTTA TCTTTCTACG TTCTTCCCGG CGTTAAATAA TCCAATACCG GCAGGTATTG CCTGTATTGC TATCGTCTGG CTGTTCACCT TTATTAATAT GCTGGGCGGG GCCTGGGTCA GCCGTTTGAC AACGATTGGC CTATTCCTGG TGCTGATCCC GGTAGTCTTG ACCGCAGTCG CCGGCTGGCA TTGGTTCGAT ATCGCGACCT ATCACGCGAA CTGGAACACG TCTACGACGA CCGACTCTCA CGCCATTGTT AAAAGTATTC TGCTCTGCCT GTGGGCGTTC GTTGGCGTTG AGTCTGCCGC CGTCAGCACC GGCATGGTGA AAAACCCGAA ACGCACCGTA CCGCTGGCAA CCATGCTGGG TACCGCGCTG GCAGGCATCA TCTATATCGC CGCGACTCAG GTTATCGCCG GGATGTTCCC AGCTTCCGTT ATGGCCTCTT CCGGCGCGCC GTTCGCTATC AGTACCTCCA CGATTCTGGG TGGCTGGGCT GCGCCGCTGG TTTCCGCCTT TACCGCTTTC GCCTGCCTGA CGTCTCTGGG CTCCTGGATG ATGCTGGTCG GCCAGGCTGG GGTTCGCGCC GCCAACGACG GCAACTTCCC GAAAATTTAC GGTGAAATGG ATAAAAACGG TATTCCGAAA AAAGGTCTGC TGTTGGCTGC GGTGAAAATG ACGGCGCTGA TGATTCTGAT CACCATCATG AACTCCAGCG GCGGTAAAGC GTCCGACCTG TTCGGCGAAC TGACCGGGAT TGCCGTACTG CTTACCATGC TGCCGTACTT CTACTCCTGT GTTGACCTGA TTCGCTTCGA AGGGTTCAAC ATCCGTAACT CGGTAAGCCT GATTTGTTCT GTACTGGGCT GCGCATTTTG CTTCATCGCA CTGATGGGCG CCAGCTCCTT CGAACTCTCC GGCACCTTTA TCGTCAGTCT GATCATCCTG ATGTTCTACG GTCGCAAAAT GCACCAGCGC CAGAACAACG ACAGCGACAA CAATACGGCT GAAGCGCTTT AA
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Protein sequence | MSSVKKIGLF ACTGVVAGNM MGSGIALLPA NLASIGGIAI WGWVISIIGA MSLAYVYARL ATKNPQQGGP IAYAGEISPA FGFQTGVLYY HANWIGNLAI GITAVSYLST FFPALNNPIP AGIACIAIVW LFTFINMLGG AWVSRLTTIG LFLVLIPVVL TAVAGWHWFD IATYHANWNT STTTDSHAIV KSILLCLWAF VGVESAAVST GMVKNPKRTV PLATMLGTAL AGIIYIAATQ VIAGMFPASV MASSGAPFAI STSTILGGWA APLVSAFTAF ACLTSLGSWM MLVGQAGVRA ANDGNFPKIY GEMDKNGIPK KGLLLAAVKM TALMILITIM NSSGGKASDL FGELTGIAVL LTMLPYFYSC VDLIRFEGFN IRNSVSLICS VLGCAFCFIA LMGASSFELS GTFIVSLIIL MFYGRKMHQR QNNDSDNNTA EAL
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