Gene SNSL254_A2689 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A2689 
Symbol 
ID6486880 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp2608716 
End bp2610179 
Gene Length1464 bp 
Protein Length487 aa 
Translation table11 
GC content57% 
IMG OID642738021 
ProductTPR repeat-containing protein YfgC 
Protein accessionYP_002041755 
Protein GI194444843 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.534359 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones76 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCAGGC AGTTGAAAAA AAACCTGGTG GCAACCCTCA TTGCAGCATT GGCTCTCGGT 
CAGGTCGCGC CCGCATTTGC CGACCCTGCC GACACGCTGC CCGATATGGG AACCTCGGCA
GGAAGCACGC TTTCTATCGG ACAAGAGATG CAAATGGGCG ACTTTTATGT ACGCCAGCTA
CGCGGTAGCG CGCCGTTAAT CAACGATCCG CTGCTGGTAC AATACATTAA CGCGCTGGGT
ATGCGTCTGG TCTCGCACGC CGACTCCGTC AAAACGCCCT TCCATTTTTT CTTGATCAAT
AATGACGAAA TCAACGCCTT CGCGTTCTTT GGCGGCAATG TGGTGCTGCA CTCGGCGCTT
TTTCGCTACG CGGATAACGA AAGCCAGCTA GCTTCAGTCA TGGCGCATGA AATCTCCCAC
GTGACGCAGC GCCACCTGGC GCGCGCGATG GAAGATCAAA AGCGCAGCGC GCCGCTTACC
TGGGTGGGCG CGCTGGGTTC CATTTTGCTG GCCATGGCCA GCCCACAGGC CGGTATGGCG
GCGCTAACCG GTACTCTGGC GGGAACGCGC CAGGGAATGA TAAGTTTCAC CCAGCAAAAT
GAGCAAGAAG CCGACCGTAT TGGTATTCAG GTACTGCAAC GCGCCGGATT TGACCCACAG
GCGATGCCCT CTTTCCTCGA AAAACTGCTC GACCAGGCGC GTTACTCCAC GCGCCCGCCT
GAAATTTTGC TCACTCACCC CTTACCGGAA AGCCGCCTTG CGGATGCCCG CAACCGTGCC
AACCAGATGC GCCCGGTCGT GGTGCAATCT TCCGCCGACT TTTATTTCGC CAAAGCGCGC
GCCCTGGGAA TGTACAATTC CGGACGTAAC CAGCTCACCA GCGACCTGCT GGATCAGTGG
TCTAAAGGCA ACGTACGTCA GCAACATGCG GCGCAATATG GCCGGGCGTT GCAGGCGATG
GAAGCGAGCA AGTACGATGA AGCGCGCAAA ACGTTGCAGC CGCTATTAAG CGCGGAACCG
AATAATGCCT GGTATCTTGA CCTCGCTACC GATATTGACC TGGGGCAGAA AAGAGCCAAC
GACGCGATTA ATCGCCTGAA AAATGCCCGC GATCTGCGCG TTAATCCTGT GCTGCAGTTA
AACCTCGCCA ATGCGTACCT CCAGGGAGGC CAGCCGAAAG CGGCGGAAAC CATTCTGAAT
CGCTACACCT TTAGCCATAA AGATGACGGT AACGGCTGGG ATCTGCTTGC TCAGGCCGAA
GCCGCGCTGA ACAACCGCGA TCAGGAGCTG GCGGCGCGCG CTGAAAGTTA TGCGCTGGCG
GGACGACTGG ATCAGGCAAT TTCACTGCTC AGTAGCGCCA GCGCCCAGGC AAAACTGGGT
AGCCAGCAAC AGGCGCGTTA CGATGCGCGT ATCGACCAGT TGCGCCAGTT ACAGGAACGC
TTCAAGCCAT ACACGAAAAT GTAA
 
Protein sequence
MFRQLKKNLV ATLIAALALG QVAPAFADPA DTLPDMGTSA GSTLSIGQEM QMGDFYVRQL 
RGSAPLINDP LLVQYINALG MRLVSHADSV KTPFHFFLIN NDEINAFAFF GGNVVLHSAL
FRYADNESQL ASVMAHEISH VTQRHLARAM EDQKRSAPLT WVGALGSILL AMASPQAGMA
ALTGTLAGTR QGMISFTQQN EQEADRIGIQ VLQRAGFDPQ AMPSFLEKLL DQARYSTRPP
EILLTHPLPE SRLADARNRA NQMRPVVVQS SADFYFAKAR ALGMYNSGRN QLTSDLLDQW
SKGNVRQQHA AQYGRALQAM EASKYDEARK TLQPLLSAEP NNAWYLDLAT DIDLGQKRAN
DAINRLKNAR DLRVNPVLQL NLANAYLQGG QPKAAETILN RYTFSHKDDG NGWDLLAQAE
AALNNRDQEL AARAESYALA GRLDQAISLL SSASAQAKLG SQQQARYDAR IDQLRQLQER
FKPYTKM