| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A2620 |
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| Symbol | ligA |
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| ID | 6482267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 2538038 |
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| End bp | 2540053 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642737953 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_002041687 |
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| Protein GI | 194444893 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.936148 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 76 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACCAA TCGAACAACA ACTGACAGAA CTGCGAACCA CGCTTCGCCA TCATGAATAT
CTGTATCATG TGATGGATGC GCCAGAGATT CCCGACGCCG AATATGACCG CCTGATGCGG
GAACTGCGAG AGCTGGAGGC GCAACGTCCG GACCTTATCA CGCCGGATTC GCCCACGCAG
CGCGTTGGCG CGGCGCCGCT GACGGCATTC AACCAGATTC GCCATGAAGT ACCGATGCTG
TCGCTCGATA ACGTATTTGA TGAAGAAAGC TTCCTGGCGT TTAACAAGCG AGTGCAGGAT
CGTCTAAAAA GCACGGAAAA TGTCATCTGG TGCTGCGAGC TAAAGCTGGA TGGCCTGGCG
GTCAGCATTC TGTATGAAAA CGGCGTGCTG GTGAGCGCTG CGACGCGTGG CGACGGCACC
ACCGGTGAAG ATATCACTTC AAACGTGCGC ACGATTCGCG CCATTCCGTT AAAGCTGCAC
GGCGATAACA TTCCGGCGCG TCTTGAAGTT CGCGGAGAGG TATTTTTACC GCAGGCCGGG
TTTGAAAAGA TCAATGAAGA CGCGCGCCGC ACTGGCGGCA AAGTGTTTGC TAACCCGCGT
AACGCGGCGG CGGGCTCGCT GCGTCAGCTC GATCCGCGTA TTACGGCGAA GCGACCGCTA
ACATTTTTTT GCTACGGCGT CGGTATTCTG GAAGGCGGCG AGTTGCCGGA TACGCATCTG
GGACGTTTGC TGCAATTTAA AGCGTGGGGG TTACCGGTCA GCGATCGCGT GACGCTGTGC
GATTCTCCCC AGGCGGTACT GGATTTTTAT CGCAACGTCG AAAAAGATCG CCCCACGCTC
GGTTTTGATA TCGACGGCGT GGTGATTAAG GTCAACTCGC TGGCTTTGCA GGAACAGCTG
GGCTTTGTGG CCCGCGCGCC GCGCTGGGCG GTGGCGTTTA AATTTCCTGC TCAGGAGCAG
ATGACTTTTG TGCGCGATGT TGAGTTTCAG GTTGGGCGCA CTGGGGCGAT TACGCCGGTG
GCGCGTCTGG AACCGGTTCA GGTGGCTGGT GTGCTGGTCA GCAATGCCAC GTTGCATAAT
GCCGATGAAA TTGAGCGACT TGGCTTGCGC ATTGGCGATA AGGTGGTTAT CCGTCGGGCA
GGCGATGTGA TCCCTCAGGT GGTCAACGTG GTTCTGTCCG AACGCCCTGA AGAGACGCGT
CCGATTGTGT TTCCAACGCA CTGTCCGGTG TGCGGATCGG ACGTAGAGCG CGTTGAAGGC
GAAGCCGTTA CCCGTTGTAC CGGCGGGCTG ATTTGCGGCG CGCAGCGTAA AGAGTCGCTG
AAACATTTTG TGTCGCGCCG GGCGATGGAT GTAGACGGGA TGGGCGATAA GATCATCGAC
CAACTGGTGG AAAGGGAGTA TGTCCATACG CCAGCGGATC TGTTCCGTCT GACGGCGGGT
AAACTGACCG GCCTGGACCG AATGGGGCCA AAGTCCGCGC AAAATGTTGT TAACGCGCTG
GAAAAAGCCA AAGCGACGAC TTTTGCGCGT TTTCTCTATG CGCTGGGCAT CCGTGAAGTG
GGTGAAGCGA CGGCGGCGGG GCTGGCGGCG TACTTCGGCA CGCTGGAGGC GCTGCAGGCT
GCCACCATTG ACGAGTTGCA GAAAGTACCC GACGTGGGGA TTGTGGTCGC TACGCACGTC
TTTAACTTTT TTGCCGAAGA GAGCAATCGT GACGTGATTG GGCAGCTACT GGCGGAAGGG
GTTCACTGGC CCGCGCCGGT AGTCATTAAT GTGCAAGAGA TTGATAGCCC GTTTGCCGGT
AAAACCGTGG TACTAACCGG TAGCCTGAGC CAGATGTCTC GCGATGACGC TAAAGCGCGT
TTAGTGGCGC TGGGCGCGAA AGTGGCAGGC AGCGTATCGA AGAAAACCGA TCTGGTGATT
GCCGGTGAAG CGGCGGGTTC GAAACTGGCC AAAGCGCAGG AACTGGGCAT CAATGTCATT
GATGAAGCGG AAATGATCCG CTTACTGGGT GCCTGA
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| Protein sequence | MEPIEQQLTE LRTTLRHHEY LYHVMDAPEI PDAEYDRLMR ELRELEAQRP DLITPDSPTQ
RVGAAPLTAF NQIRHEVPML SLDNVFDEES FLAFNKRVQD RLKSTENVIW CCELKLDGLA
VSILYENGVL VSAATRGDGT TGEDITSNVR TIRAIPLKLH GDNIPARLEV RGEVFLPQAG
FEKINEDARR TGGKVFANPR NAAAGSLRQL DPRITAKRPL TFFCYGVGIL EGGELPDTHL
GRLLQFKAWG LPVSDRVTLC DSPQAVLDFY RNVEKDRPTL GFDIDGVVIK VNSLALQEQL
GFVARAPRWA VAFKFPAQEQ MTFVRDVEFQ VGRTGAITPV ARLEPVQVAG VLVSNATLHN
ADEIERLGLR IGDKVVIRRA GDVIPQVVNV VLSERPEETR PIVFPTHCPV CGSDVERVEG
EAVTRCTGGL ICGAQRKESL KHFVSRRAMD VDGMGDKIID QLVEREYVHT PADLFRLTAG
KLTGLDRMGP KSAQNVVNAL EKAKATTFAR FLYALGIREV GEATAAGLAA YFGTLEALQA
ATIDELQKVP DVGIVVATHV FNFFAEESNR DVIGQLLAEG VHWPAPVVIN VQEIDSPFAG
KTVVLTGSLS QMSRDDAKAR LVALGAKVAG SVSKKTDLVI AGEAAGSKLA KAQELGINVI
DEAEMIRLLG A
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