Gene SNSL254_A1977 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A1977 
SymbolcspC 
ID6482552 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand- 
Start bp1933916 
End bp1934125 
Gene Length210 bp 
Protein Length69 aa 
Translation table11 
GC content47% 
IMG OID642737343 
Productcold shock-like protein CspC 
Protein accessionYP_002041093 
Protein GI194446619 
COG category[K] Transcription 
COG ID[COG1278] Cold shock proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones0 
Plasmid unclonability p-value0.00000786929 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones59 
Fosmid unclonability p-value0.190727 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAAGA TTAAAGGTCA AGTTAAGTGG TTCAACGAAT CCAAAGGTTT TGGCTTCATT 
ACTCCGGCTG ACGGCAGCAA AGATGTGTTC GTACACTTCT CCGCTATCCA GGGCAATGGT 
TTCAAAACTC TGGCTGAAGG CCAGAACGTT GAGTTCGAAA TTCAGGACGG CCAGAAAGGT 
CCGGCTGCTG TTAACGTAAC AGCTATCTGA
 
Protein sequence
MAKIKGQVKW FNESKGFGFI TPADGSKDVF VHFSAIQGNG FKTLAEGQNV EFEIQDGQKG 
PAAVNVTAI