Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1890 |
Symbol | |
ID | 6486905 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 1849905 |
End bp | 1851434 |
Gene Length | 1530 bp |
Protein Length | 509 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 642737259 |
Product | tetratricopeptide repeat protein |
Protein accession | YP_002041009 |
Protein GI | 194445007 |
COG category | [R] General function prediction only |
COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 0.0490487 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTTTTT CATCAATTTT CAAAATAATA ATATTAAATA TATTTATTTC AAAAATGGCT CACGCTGCTG TCTGCGAGGA GCGCTATCCC GCCGACTCAG AAGAATGCCA GTACGTTCAG GAATTAGAGC AAAAAGCGGA ACAAGGAGAT GAAAGCGCGC AGTTCTCGCT TGGAAGCTGG TATGCGGAGG GGCGATACGT TAAGCCTGAT TATAAACTAG CCATAAAATG GCTGGAGAAA GCGGGTAAAC AAGGTTCGGA TTTTTCCTAT TTCATCCTTG GCTATCATTA CAACTATGGT GAAAATTTTC CACTTAGTCG ACAAAAAGCG CTGGAGTGGT ATCGCAAGGC GGCAGAGCTA GGGGATAGTA GTACGCAAGA AATTCTCGGT GACGCCTATA TGTATGGCGA TGGGTTTCCC CAAAATACCC AGCTAGCGCT GGAGTGGTAT CGAAAAGCCG CCTCTCCAAC CAATGATGCG GGCGTTGTCC GCGGACAGGG TTCAGCTTCG TCAGCACAAT TTAAGCTTGG AGTAATGTAC GCCCACGGTC AGGGCGTTCC TCAGGATTAT CAGCAAACGG CGATCTTGAT GCGTAAAGCG GCGGAAAATA TGTACTACCC CGCGCAACTT TATCTCGGTG TTGCCTATTT TTATGGTGAA GGCGTGCCTC AGGACTATCG TCAGGCAGTT TACTGGCTTA ATGAAGGTAT ACCAGGCAGC TATACGCCAG GCCACATTCC GCTGAGTGCG CTCTATGATA AAGCGCATCC CGCTGACCGG GTTCACTCTC AGACGTGGTA TCGAAAAACA GCGCAACGCG TGATGGCAAA GGTACAGTAC AATTTTGGCG TATGGTATTA CAACGGTTAT CACTTATTGA AAGATCACAA CCTGGCGCTG GAGTGGTATC GCAGAGCCGC AGCGCAAGGA TTGGCCGAGG CGCAGGATGC GATCGGCGTG ATGTTTATGC AGGGTGAGGG CGTTTCTCAG GACTACCAAC AGGCGCTGGC GTGGTATCGC AAAGCCGCTC GCCAGGGGCT GCCTGCTGCG CAAACGCATC TGGGCATCAT GTCTGCATTT GGTCGCGGCG TCGCGCAAAG CGACAGACAG GCTATCGCAT GGTATCGAAA AGCAGCAAAA CAGGATTTTG CGAAAGCGCA ATATCAGCTT GGCGTGGCAT ATAGCACGGG AAGAGGCGTG CCTGAAAATA GCCGGAATGC GCTGAAGTGG TACCTTAAAG CGGCAGAGCA GGGGTTTACT CCGGCACAAT TAGCGCTTGG GGAAATTTAT GCTCATGGGC GCCAGGGTGT GCCTAAAGAT AATAAGCAGG CCTATATTTG GTATTACATG GCAAGTATAT ATACGGAAAA ATCTAAGGAT GATTGTTCAG CGCTCATTGC CGAAAGAAAC CGACTCAAGG GAACGCTTAC CCCAGATCAA CTTAGCGAGA CATATGCCGC CTTTAATCTC ATCTGGCGAA AAATTGACCA GTCAAAGGAG GCGAAAAAGA CAGCCAGGAA GAAGTATTGA
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Protein sequence | MRFSSIFKII ILNIFISKMA HAAVCEERYP ADSEECQYVQ ELEQKAEQGD ESAQFSLGSW YAEGRYVKPD YKLAIKWLEK AGKQGSDFSY FILGYHYNYG ENFPLSRQKA LEWYRKAAEL GDSSTQEILG DAYMYGDGFP QNTQLALEWY RKAASPTNDA GVVRGQGSAS SAQFKLGVMY AHGQGVPQDY QQTAILMRKA AENMYYPAQL YLGVAYFYGE GVPQDYRQAV YWLNEGIPGS YTPGHIPLSA LYDKAHPADR VHSQTWYRKT AQRVMAKVQY NFGVWYYNGY HLLKDHNLAL EWYRRAAAQG LAEAQDAIGV MFMQGEGVSQ DYQQALAWYR KAARQGLPAA QTHLGIMSAF GRGVAQSDRQ AIAWYRKAAK QDFAKAQYQL GVAYSTGRGV PENSRNALKW YLKAAEQGFT PAQLALGEIY AHGRQGVPKD NKQAYIWYYM ASIYTEKSKD DCSALIAERN RLKGTLTPDQ LSETYAAFNL IWRKIDQSKE AKKTARKKY
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