Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1871 |
Symbol | oppD |
ID | 6483673 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 1832967 |
End bp | 1833974 |
Gene Length | 1008 bp |
Protein Length | 335 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642737244 |
Product | oligopeptide transporter ATP-binding component |
Protein accession | YP_002040996 |
Protein GI | 194443191 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.530449 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 83 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCTTAT CAGAAACCGC AACTCAGGCA CCGCAACCGG CGAATGTACT GCTGGAGGTA AACGATCTTC GTGTTACGTT CGCTACGCCA GATGGCGATG TGACGGCGGT CAACGATCTG AACTTTACGC TTCGCGCTGG AGAAACGTTA GGTATTGTTG GCGAGTCTGG ATCGGGGAAA TCGCAAACGG CGTTCGCATT AATGGGACTG CTGGCGACGA ATGGTCGAAT CGGCGGTTCT GCGACCTTCA ACGGACGTGA AATTCTTAAT CTACCTGAGC GCGAACTGAA TACGCTGCGC GCAGAACAGA TTTCGATGAT TTTTCAGGAT CCGATGACCT CGCTAAATCC TTATATGCGC GTTGGGGAGC AGTTAATGGA AGTCCTGATG CTGCATAAAG GGATGAGCAA AGCGGAAGCT TTTGAAGAGT CCGTCAGAAT GCTGGATGCC GTAAAAATGC CGGAAGCGCG CAAACGGATG AAAATGTACC CGCACGAATT TTCCGGCGGA ATGCGTCAAC GTGTGATGAT TGCGATGGCG CTGTTGTGCA GGCCGAAACT GCTTATTGCC GATGAGCCTA CCACCGCGCT TGATGTTACC GTGCAGGCGC AGATTATGAC CTTGCTTAAT GAGCTAAAGC GCGAATTTAA TACCGCCATT ATCATGATTA CCCACGATCT GGGCGTGGTC GCGGGTATTT GCGATAAGGT CCTGGTAATG TATGCCGGGC GTACCATGGA ATACGGTAAG GCGCGCGATG TCTTTTATCA GCCCGTTCAT CCGTATTCGA TAGGCTTGCT TAATGCGGTG CCGCGTCTGG ATAGCGAGGG GGCGGAAATG TTGACGATTC CGGGCAATCC TCCCAATTTA TTGCGTTTGC CTAAAGGTTG TCCGTTCCAG CCGCGTTGTC CTCATGCGAT GGAGATCTGC AATAATGCGC CGCCACTTGA AGCGTTCAGT CCTGGTCGCT TGCGCGCCTG TTTTAAACCG GTGGAGGAAC TGCTATGA
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Protein sequence | MSLSETATQA PQPANVLLEV NDLRVTFATP DGDVTAVNDL NFTLRAGETL GIVGESGSGK SQTAFALMGL LATNGRIGGS ATFNGREILN LPERELNTLR AEQISMIFQD PMTSLNPYMR VGEQLMEVLM LHKGMSKAEA FEESVRMLDA VKMPEARKRM KMYPHEFSGG MRQRVMIAMA LLCRPKLLIA DEPTTALDVT VQAQIMTLLN ELKREFNTAI IMITHDLGVV AGICDKVLVM YAGRTMEYGK ARDVFYQPVH PYSIGLLNAV PRLDSEGAEM LTIPGNPPNL LRLPKGCPFQ PRCPHAMEIC NNAPPLEAFS PGRLRACFKP VEELL
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