Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1803 |
Symbol | |
ID | 6484288 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 1768353 |
End bp | 1769966 |
Gene Length | 1614 bp |
Protein Length | 537 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 642737179 |
Product | periplasmic murein peptide-binding protein |
Protein accession | YP_002040931 |
Protein GI | 194445072 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 0.00501366 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAGGCATT CTGTTTCAGT AACCTGTTGT GCGCTGTTGG TTAGCAGCTT TTCCCTGGCA TATGCTGCGG ATGTTCCCGG CGGAACGGTA CTGGCAGAGA AACAAGAACT GGTGCGTCAT ATCAAAGATG AGCCCGCTTC GTTAGATCCA GCGAAAGCCG TTGGGCTGCC TGAAATTCAG GTGATCCGCG ATCTGTTTGA AGGGCTGGTT AACCAGAACG AAAAGGGTGA AATTATCCCT GGCGTCGCCA GCCAGTGGAA GAGCAATGAT AATCGTATCT GGACGTTTAC GTTGCGGGAT GATGCGCAAT GGGCCGATGG AACGCCGGTG ACCGCCCAGG ATTTTGTCTA TAGCTGGCAA CGTCTCGTTG ATCCCAAAAC GCTTTCCCCC TTCGCCTGGT TTGCCGCGCT GGCTGGCATC ACTAATGCGC AAGCCATTAT CGACGGTAAA GTCACGCCGG ATCAGCTTGG CGTCAGTGCC GTGGACGCAC ACACTTTGCG TATTCAGCTT GACAAGCCGT TGCCCTGGTT TGCCAGTCTG ACCGCCAGTT TTGCCTTTTA TCCGGTCCAA AAAGCGAATG TCGAAAGCGG CAAAGACTGG ATGAAGCCGG GAAAACTGAT CGGCAATGGC GCGTATGTGC TTAAAGAGCG CGTGGTAAAT GAAAAACTGG TGGTCGTGCC TAATACGCAT TACTGGGATA ACGCGAAAAC GGTACTGCAA AAAGTGACAT TTTTACCCAT TAACCAGGAA TCGGCTGCGA CGAAACGTTA CCTTGCCGGT GATATTGATA TCACCGAATC TTTCCCTAAA AATATGTACC AGAAATTATT GAAGGATATT CCAGGGCAAG TTTATACGCC GCCGCAATTA GGGACTTATT ATTATGCGTT TAATACGCAG AAAGGGCCGA CGGCGGATTC CCGCGTTCGT CTGGCGCTAA GTATGACCAT TGATCGCCGT TTGATGGCGG AAAAAGTCTT AGGTACCGGT GAAAAACCGG CCTGGCATTT TACACCGGAT GTCACGGCAG GATTTACGCC CGATCCTTCA CCGTTTGAAC AAATGAGCCA GGAAGAACTT AATGCCCAGG CGAAAACATT GCTGCGTGCA GCAGGCTACG GATCGCAGAA GCCGCTTAAA TTAACCCTGC TTTACAATAC CTCAGAAAAC CATCAGAAAA TCGCGATTGC GGTGGCGTCA ATGTGGAAGA AAAATCTGGG GGTGGATGTG AAATTGCAAA ACCAGGAGTG GAAAACGTAT ATCGACAGCC GGAATACCGG TAATTTTGAT GTTATTCGCG CCTCCTGGGT GGGTGATTAC AACGAACCGT CGACTTTCTT ATCCTTATTA ACGTCCACGC ATACGGGGAA TATTTCACGC TTTACTAATC CGACTTATGA CAAAATCCTG ACGCAAGCGA CGATGGAAAA TACCGCCGAA GCGCGTAACG CGGATTACAA TGCAGCGGAG AAAATTTTAA CGGAACAAGC GCCTATAGCG CCTATTTATC AGTATACCAA TGGCCGGTTA ATTAAACCGT GGGTAAAGGG ATACCCCATT ACTAACCCGG AAGATGTGGC CTATAGCCGT ACAATGTATA TCGTGAAGCA CTGA
|
Protein sequence | MRHSVSVTCC ALLVSSFSLA YAADVPGGTV LAEKQELVRH IKDEPASLDP AKAVGLPEIQ VIRDLFEGLV NQNEKGEIIP GVASQWKSND NRIWTFTLRD DAQWADGTPV TAQDFVYSWQ RLVDPKTLSP FAWFAALAGI TNAQAIIDGK VTPDQLGVSA VDAHTLRIQL DKPLPWFASL TASFAFYPVQ KANVESGKDW MKPGKLIGNG AYVLKERVVN EKLVVVPNTH YWDNAKTVLQ KVTFLPINQE SAATKRYLAG DIDITESFPK NMYQKLLKDI PGQVYTPPQL GTYYYAFNTQ KGPTADSRVR LALSMTIDRR LMAEKVLGTG EKPAWHFTPD VTAGFTPDPS PFEQMSQEEL NAQAKTLLRA AGYGSQKPLK LTLLYNTSEN HQKIAIAVAS MWKKNLGVDV KLQNQEWKTY IDSRNTGNFD VIRASWVGDY NEPSTFLSLL TSTHTGNISR FTNPTYDKIL TQATMENTAE ARNADYNAAE KILTEQAPIA PIYQYTNGRL IKPWVKGYPI TNPEDVAYSR TMYIVKH
|
| |