Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1768 |
Symbol | nifJ |
ID | 6484541 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 1738478 |
End bp | 1742002 |
Gene Length | 3525 bp |
Protein Length | 1174 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642737147 |
Product | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
Protein accession | YP_002040899 |
Protein GI | 194445273 |
COG category | [C] Energy production and conversion |
COG ID | [COG0674] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [COG1013] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [COG1014] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit |
TIGRFAM ID | [TIGR02176] pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 0.0943296 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAACAA TTGACGGTAA TGGCGCGGTA GCGTCGGTGG CGTTCCGTAC CAGCGAGGTT ATCGCCATTT ACCCGATTAC GCCCAGTTCA ACAATGGCTG AACAAGCGGA TGCCTGGGCC GGTAATGGGC TTAAAAATGT CTGGGGCGAT ACGCCGCGTG TGGTAGAGAT GCAGTCGGAA GGCGGCGCGA TCGCCGCCGT TCACGGTGCG TTACAAACCG GTTCGCTTTC TACGTCATTT ACATCATCGC AGGGGCTGCT GCTGATGATT CCAACGCTGT ATAAACTGGC GGGGCAGCTC ACGCCGTTTG TACTGCACGT TGCCGCGCGC ACCGTCGCCA CACACGCGCT TTCTATTTTT GGCGACCATT CCGATGTGAT GGCGGTCCGC CAGACAGGCT GCGCGATGTT ATGCGCCGCC AGCGTTCAGG AAGCGCAGGA TTTTGCGCTG ATCGCGCACA GGGCTACGCT GAAAAGCCGC GTTCCGTTTA TTCATTTTTT TGATGGCTTC CGTACATCGC ATGAAATCAA CAAAATTATA CCGCTAACGG ATGAAACCAT TCTGAACCTG ATGCCGCAGG CGGAGATCGA CGCTCACCGC GCCCGCGCGC TGAATCCGGA ACATCCGGTG ATTCGTGGAA CTTCAGCGAA TCCGGACACC TACTTCCAGT CTCGCGAAGC GACCAATCCG TGGTACAACG CCGTTTATGA TCATGTTGAA GAGGCGATGA AGGCATTTGG CGACGCTACG GGCCGCCACT ATCAGCCATT TGAATATTAT GGCCATCCCC AGGCTGAACG CGTCATCATT ATGATGGGCT CCGCCCTCGG CACCTGCGAA GAGGTCGTGG ACGAGCTACT GATACGCGGA GAAAAGGTTG GTGTTCTGAA AGTCCGTCTG TTCCGTCCCT TCTCCGCCAA ACATTTGTTA CAGGCATTAC CGGAAACCGT TCGCGCTATC GCCGTGCTGG ATCGTACCAA AGAGCCTGGC GCGCAGGCCG AGCCGCTTTA TCTGGACGTG ATGACCGCAC TGGCGGAAGC CTTTAATAAT GGCGAGCGCG AAACGTTGCC GCGCACCATT GGCGGCCGTT ATGGGCTATC ATCCAAAGAG TTCGGCCCGG CGTGCGTACT GGCGGTCTTT AATGAACTCA GCCGCGCGAA ACCCAAACCA CGGTTTACGG TGGGCATTTA TGATGACGTT ACTAACCTCT CGCTGCCATT ACCGGAAAAT ACCCTGCCCG GCAGCGCTAA ACTGGAAGCG TTATTTTACG GCCTGGGAAG CGACGGCAGC GTATCCGCCA CGAAAAATAA TATTAAAATT ATCGGTAATT CTACGCCGTG GTATGCGCAA GGTTATTTCG TTTATGACTC TAAAAAAGCT GGCGGGCTCA CGGTATCGCA CCTGCGCGTC AGCGAAAAAC CCATTCGTTC CGCTTACTTA ATTGCTCAGG CGGATTTTGT CGGCTGCCAT CAATTACAGT TTATCGATAA ATATCAGATG GCGGAACGTC TAAAGCCCGG CGGTATCTTT CTGCTTAATA CGCCGTACAG CGCCGACGAG GTCTGGTCGC GTCTGCCGCA AGAAGTTCAG GCGGTGTTGA ATCAGAAAAA GGCGCGTTTT TACGTGGTTA ACGCGGCGAA AATCGCCCGC GAATGTGGAC TTGGCGCCCG CATCAATACC GTCATGCAAA TGGCTTTCTT CCACCTGACG CATATTCTTC CGGGCGATAG CGCCCTGGTT GAGTTGCAGG GCGCGATTGC CAAAAGCTAT AGCAGCAAAG GTCAGGATCT GGTTGAGCGT AACTGGCAGG CATTGGCTCT GGCGCAGGAA TCGCTGGCGG AAGTGCCGTT GCAGGCGGTT AATCCGCATA GCGCGCATCG CCCGCCGGTC GTCTCCGACG CCGCGCCGGA TTTCGTGAAA ACCGTTACCG CCGCCATGTT GGCGGGCCTC GGCGACGCAC TGCCTGTTTC CGCGCTGCCG CCGGACGGAA CATGGCCAAT GGGCACCACC CGCTGGGAAA AACGCAATAT CGCCGAAGAG ATTCCTGTCT GGAAAGAGGA ACTGTGTACA CAATGTAATC ACTGCGTCGC CGCCTGCCCT CACTCGGCAA TTCGTGCAAA AGTCGTTTCC CCGCAGGCGA TGGAGAACGC GCCAGCCAGT CTGCATTCGC TGGACGTGAA GTCCCGCGAT ATGCGCGGCC AGAAATATGT GCTGCAGGTC GCGCCGGAAG ACTGTACTGG CTGTAATTTA TGCGTAGAGG TCTGCCCGGC TAAAGATCGG CAAAATCCAC AGATCAAGGC GATTAACATG ATGTCGCGCC TGGAGCATGT GGAAGAAGAG AAAGTGAATT ATGACTTTTT CCTCGACTTA CCGGAAATCG ATCGCAGCAA ACTGGAACGA ATTGATATCC GCACATCGCA GCTTATTACG CCGCTGTTTG AATATTCCGG CGCCTGTTCC GGCTGCGGTG AAACGCCGTA TATTAAACTG CTGACTCAGT TATATGGCGA CAGAATGTTA ATCGCTAACG CCACGGGGTG TTCCTCTATT TACGGCGGTA ACTTACCCTC AACGCCTTAT ACCACCGATG CCAACGGACG CGGCCCGGCA TGGGCGAATT CGTTATTTGA AGATAACGCG GAATTTGGTC TCGGTTTCCG TCTGAGCGTG GATCAGCACC GGGCGCGCGT CATGCGTTTA CTGGCGCAAT TCGCCGATCG CATTCCGGCG GAATTAAACG ATGCGCTGCA TGCCGAAGCA ACGCCTGACG TTCGGCGTGA GCAGGTCGCC GCATTACGCC AACATCTGAA ATCGGTTGCG GGCGCAGAGG AACTGTTAAA GGATGCTGAT GCGCTGGTAG AAAAATCAAT CTGGCTGATT GGCGGCGATG GTTGGGCATA CGACATCGGC TTTGGCGGTT TAGACCATGT GTTAAGCCTG ACGGAGAATG TCAATATTCT GGTTCTGGAT ACGCAGTGTT ATTCCAATAC TGGCGGCCAG GCGTCGAAGG CGACGCCGCT TGGCGCCGTC ACTAAGTTTG GCGAACATGG CAAGCGTAAA GCCCGTAAAG ATCTTGGCGT CAGCATGATG ATGTATGGTC ATGTTTATGT CGCGCAAATT TCGCTGGGCG CGCAGTTAAA CCAGACGGTG AAAGCCATCC AGGAGGCCGA AGCCTGGCCA GGACCGTCGC TGATCATTGC CTATAGCCCC TGTGAGGAAC ATGGTTACGA TCTGGCGCTA AGCCATGACC AGATGCGCCA GTTAACGGCG ACCGGTTTCT GGCCGTTATA CCGCTTTGAT CCCCGCCGTG CGGATGAAGG CAAGCCGCCG CTGGCTCTGG ACTCTCGGCC ACCGTCTGAT GCCCTGGCGG AAACGTTGCT TAATGAACAG CGTTTCCGTC GCCTGAATGC GCAACAGCCT GAAGTAGCTG AACAATTATG GCGAGATGCC GCATTGGATT TGCAAAAACG CTATGACTTT CTTGCCTTGC TGGCAGGAAA AGCGGAAAAA CCCGGCGCAG ATTAA
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Protein sequence | MQTIDGNGAV ASVAFRTSEV IAIYPITPSS TMAEQADAWA GNGLKNVWGD TPRVVEMQSE GGAIAAVHGA LQTGSLSTSF TSSQGLLLMI PTLYKLAGQL TPFVLHVAAR TVATHALSIF GDHSDVMAVR QTGCAMLCAA SVQEAQDFAL IAHRATLKSR VPFIHFFDGF RTSHEINKII PLTDETILNL MPQAEIDAHR ARALNPEHPV IRGTSANPDT YFQSREATNP WYNAVYDHVE EAMKAFGDAT GRHYQPFEYY GHPQAERVII MMGSALGTCE EVVDELLIRG EKVGVLKVRL FRPFSAKHLL QALPETVRAI AVLDRTKEPG AQAEPLYLDV MTALAEAFNN GERETLPRTI GGRYGLSSKE FGPACVLAVF NELSRAKPKP RFTVGIYDDV TNLSLPLPEN TLPGSAKLEA LFYGLGSDGS VSATKNNIKI IGNSTPWYAQ GYFVYDSKKA GGLTVSHLRV SEKPIRSAYL IAQADFVGCH QLQFIDKYQM AERLKPGGIF LLNTPYSADE VWSRLPQEVQ AVLNQKKARF YVVNAAKIAR ECGLGARINT VMQMAFFHLT HILPGDSALV ELQGAIAKSY SSKGQDLVER NWQALALAQE SLAEVPLQAV NPHSAHRPPV VSDAAPDFVK TVTAAMLAGL GDALPVSALP PDGTWPMGTT RWEKRNIAEE IPVWKEELCT QCNHCVAACP HSAIRAKVVS PQAMENAPAS LHSLDVKSRD MRGQKYVLQV APEDCTGCNL CVEVCPAKDR QNPQIKAINM MSRLEHVEEE KVNYDFFLDL PEIDRSKLER IDIRTSQLIT PLFEYSGACS GCGETPYIKL LTQLYGDRML IANATGCSSI YGGNLPSTPY TTDANGRGPA WANSLFEDNA EFGLGFRLSV DQHRARVMRL LAQFADRIPA ELNDALHAEA TPDVRREQVA ALRQHLKSVA GAEELLKDAD ALVEKSIWLI GGDGWAYDIG FGGLDHVLSL TENVNILVLD TQCYSNTGGQ ASKATPLGAV TKFGEHGKRK ARKDLGVSMM MYGHVYVAQI SLGAQLNQTV KAIQEAEAWP GPSLIIAYSP CEEHGYDLAL SHDQMRQLTA TGFWPLYRFD PRRADEGKPP LALDSRPPSD ALAETLLNEQ RFRRLNAQQP EVAEQLWRDA ALDLQKRYDF LALLAGKAEK PGAD
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