Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1622 |
Symbol | |
ID | 6485192 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 1587447 |
End bp | 1588133 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642737008 |
Product | GntR family transcriptional regulator |
Protein accession | YP_002040760 |
Protein GI | 194444466 |
COG category | [K] Transcription |
COG ID | [COG1802] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.62397 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 89 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGTCG AAACGCAGCT TAACCCTACA CAGCCTGTCA ACCAGCAAAT TTACCGTATT CTTCGGCGTG ATATCGTGCA TTGTCTTATC CCGCCTGGCA CGCCGCTATC AGAAAAAGAG GTCTCAACCC GTTTTAACGT TTCGCGTCAA CCGGTGCGCG AGGCTTTTAT AAAGCTGGCG GAAAATGGGT TGATTCAGAT CCGCCCTCAG CGCGGTAGTT ATGTGAATAA GATTTCGCTT TCTCAGGTAC AGAATGGCTG CTTTGTTCGG CAGGCGATCG AATGCGCGGT GGTCCGCCGT GCGGCGGCGA TGATCACCGA CAACCAGTGC TATCAACTGG CGCAAAACCT GCACCTGCAA CATATTGCTA TCGAGCGCAA ACAGATTGAT GATTTTTTCC AGCTTGATGA CGATTTCCAC CAAACGCTGG CGCAGATCGC CGATTGCCAG TTAGCGTGGG ATACCATTGA AAATATCAAA GCGACAATCG ACCGGGTTCG CTATATGAGT CTGGATCATG TTTCTCCGCC GGAGATGTTG TTGCGCCAGC ACCATGATAT TTTCTCCGCG CTGGAAAATC GTGACGGCAA TGCGGTTGAG AGCGCAATGA CCCAGCATTT GCAGGAAATT AGCGAATCCG TCCAGCTTAT CCGTCAGGAA AACAGCGGCT GGTTTAGCGA AGAGTAA
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Protein sequence | MTVETQLNPT QPVNQQIYRI LRRDIVHCLI PPGTPLSEKE VSTRFNVSRQ PVREAFIKLA ENGLIQIRPQ RGSYVNKISL SQVQNGCFVR QAIECAVVRR AAAMITDNQC YQLAQNLHLQ HIAIERKQID DFFQLDDDFH QTLAQIADCQ LAWDTIENIK ATIDRVRYMS LDHVSPPEML LRQHHDIFSA LENRDGNAVE SAMTQHLQEI SESVQLIRQE NSGWFSEE
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