Gene SNSL254_A1315 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A1315 
Symbolmfd 
ID6485007 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp1300676 
End bp1304122 
Gene Length3447 bp 
Protein Length1148 aa 
Translation table11 
GC content57% 
IMG OID642736713 
Producttranscription-repair coupling factor 
Protein accessionYP_002040470 
Protein GI194446626 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1197] Transcription-repair coupling factor (superfamily II helicase) 
TIGRFAM ID[TIGR00580] transcription-repair coupling factor (mfd) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.0000147681 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCTGAAA AACAACGTTA CACGCTGCCG ACAAAAGCGG GCGATCAGCG CCAGTTGGGC 
GAACTTACCG GTGCCGCCTG CGCTACGCTG GTGGCGGAGA TAGCTGAACG CCATGCCGGT
CCGGTGGTAC TCATAGCGCC TGACATGCAA AATGCTCTGC GATTGCATGA TGAAATCCGC
CAGTTTACCG ATCAGATGGT CATGAACCTG GCGGACTGGG AAACGCTACC GTATGACAGC
TTCTCCCCGC ATCAGGAAAT TATCTCTTCG CGTCTGTCCA CGCTCTACCA GTTGCCGTCG
ATGCAGCGCG GCGTCTTGAT TGTACCGGTA AACACCCTGA TGCAGCGCGT TTGTCCGCAT
AGCTATCTGC ATGGTCATGC GCTGGTGATG AAAAAAGGCC AGCGGCTGTC CCGCGACGCT
CTGCGCGCGC AGCTTGACAG CGCCGGTTAT CGGCATGTCG ATCAGGTGAT GGAGCATGGC
GAATACGCGA CGCGCGGCGC GCTGTTGGAT CTCTTTCCGA TGGGCAGCGA ACAGCCTTAT
CGCCTCGACT TTTTTGATGA TGAAATCGAC AGCCTGCGTC TGTTTGACGC GGATACCCAG
CGTACGCTGG AGGAGGTTGA GGCCATCAAT TTGTTGCCCG CGCACGAATT TCCTACCGAC
AAAGCCGCTA TTGAGCTTTT CCGTAGCCAG TGGCGCGATA CCTTTGAGGT AAAACGCGAC
GCCGAGCACA TCTATCAGCA GGTCAGCAAA GGCACCCTCC CCGCCGGGAT CGAATACTGG
CAGCCGCTCT TTTTCAGCGA ACCGTTACCG CCATTATTTA GCTACTTCCC CGCCAATACT
CTGGTGGTGA ATACCGGCTC GCTGGAAACC AGCGCCGAAC GCTTTCAGGC CGATACGCTG
GCGCGTTTTG AAAATCGTGG CGTCGATCCT ATGCGCCCGC TTTTGCCGCC GGAAGCCCTC
TGGCTACGGG TGGATGAGCT CTTTTCCGAG CTTAAACGCT GGCCTCGCCT CCAGCTTAAA
ACCGACCACC TGCCGGAAAA AGCCGCCAAT ACCAATCTCG GTTTCCAGAA ATTACCGGAT
TTGGCTATCC AGGCGCAGCA GAAAGCGCCG CTGGACGCGC TGCGTAAGTT CCTCGAATCT
TTCAGCGGTC CGGTGATTTT TTCTGTGGAA AGCGAAGGAC GCCGCGAAGC GCTGGGAGAG
CTCCTGGCCC GCATAAAAAT CGCGCCGAAG CGGATATTAC GCCTGGACGA GGCGCAGGAT
GCGGGACGCT ATCTGATGAT TGGCGCCGCA GAACATGGTT TTATCGACAC CCAACGCAAT
CTGGCGCTGA TTTGCGAAAG CGATCTCCTG GGTGAACGGG TCGCGCGTCG CCGCCTGGAT
TCCCGTCGTA CGATCAACCC GGATACGTTG ATTCGTAACC TGGCGGAGCT CCACGTCGGT
CAACCGGTAG TGCATCTGGA GCACGGCGTC GGACGCTATG CCGGCATGAC CACTCTGGAG
GCTGGCGGCA TCAAGGGTGA GTATCTGATG CTCACCTACG CCAATGACGC CAAACTGTAT
GTGCCGGTTT CCTCATTGCA TCTGATTAGC CGCTATGCCG GCGGCGCGGA AGAAAGTGCG
CCGCTGCATA AACTGGGTGG CGACGCCTGG TCGCGCGCCC GGCAGAAAGC GGCGGAAAAA
GTGCGCGATG TCGCAGCGGA ACTGTTGGAT ATTTATGCGC AACGGGCGGC AAAAGAGGGG
TTTGCCTTTA AGCATGATCG TGAGCAGTAT CAGTTATTCT GCGACAGCTT CCCGTTTGAA
ACGACGCCCG ATCAGGCACA GGCGATTAAC GCCGTATTGA GCGATATGTG CCAACCGCTG
GCGATGGACA GGCTGGTGTG CGGCGACGTC GGCTTCGGCA AAACCGAAGT GGCGATGCGC
GCCGCGTTCC TGGCGGTGGA AAACCATAAA CAGGTAGCGG TACTGGTGCC GACCACGCTG
CTGGCGCAGC AACACTATGA CAACTTCCGC GACCGTTTCG CCAACTGGCC GGTACGCATT
GAGATGCTGT CCCGCTTTCG CAGCGCCAAA GAGCAGACGC AAATCCTGGC GGAAGCCGCC
GAGGGTAAGA TCGATATTCT GATCGGTACG CATAAACTGC TACAAAGCGA TGTGAAGCTA
CGCGACCTCG GCCTGCTGAT TGTCGATGAA GAGCACCGTT TCGGCGTGCG CCACAAAGAG
CGAATTAAGG CGATGCGCGC CGATGTCGAT ATTCTGACGC TCACGGCGAC GCCGATCCCG
CGGACGCTGA ATATGGCGAT GAGCGGTATG CGCGATCTCT CTATTATCGC CACCCCCCCT
GCCCGTCGTC TGGCGGTAAA AACCTTTGTC CGCGAGTATG ATAGCCTGGT GGTAAGGGAA
GCGATTCTGC GTGAAATCCT GCGCGGCGGT CAGGTTTACT ATTTGTACAA TGACGTCGAA
AATATTCAGA AAGCCGCAGA GCGGCTGGCG GAACTGGTGC CGGAAGCGCG AATCGCTATA
GGCCACGGGC AGATGCGTGA ACGTGAGCTA GAACGGGTCA TGAACGATTT CCACCATCAA
CGTTTTAACG TGCTGGTGTG TACTACCATT ATCGAAACGG GGATCGACAT TCCCACCGCT
AACACGATCA TCATTGAACG CGCGGATCAT TTCGGCCTCG CGCAGTTGCA CCAGCTGCGT
GGCCGCGTTG GGCGCTCGCA CCATCAGGCC TACGCCTGGC TGTTGACGCC ACATCCTAAG
GCCATGACCA CCGATGCGCA AAAACGGCTG GAGGCGATTG CGTCGCTGGA GGATTTAGGC
GCCGGGTTTG CGCTGGCGAC CCACGATCTG GAGATCCGCG GCGCGGGCGA ACTGCTTGGC
GAAGAGCAAA GCGGCTCAAT GGAAACCATC GGCTTCTCAC TCTACATGGA ATTGCTGGAA
AACGCCGTTG ATGCGCTGAA AGCAGGCCGC GAACCCTCGC TGGAAGATCT CACCAGTCAG
CAAACGGAAG TCGAGCTGCG AATGCCGTCG TTACTGCCGG ATGATTTTAT TCCGGATGTT
AATACCCGGC TGTCATTCTA TAAACGCATT GCCAGCGCGA AGAACGAAAA CGAGCTGGAA
GAGATCAAAG TGGAATTGAT CGACCGCTTC GGCCTGCTGC CCGATCCGGC GCGTAATCTG
CTGGATATCG CACGCCTGCG CCAACAGGCG CAAAAGCTCG GCATCCGAAA ACTGGAGGGT
AACGAGAAAG GCGGAACGAT TGAGTTCGCC GAGAAAAACC ACGTTGACCC CGCCTGGCTT
ATCGGGTTGC TGCAAAAACA GCCGCAGCAT TTCCGTCTGG ATGGCCCGAC GCGCCTCAAG
TTTATTCAGG ATTTAAGCGA ACGTAAAACG CGTATAGACT GGGTACGCCA GTTTATGCAG
CAACTGGAAG AAAACGCTAT TGCATAA
 
Protein sequence
MPEKQRYTLP TKAGDQRQLG ELTGAACATL VAEIAERHAG PVVLIAPDMQ NALRLHDEIR 
QFTDQMVMNL ADWETLPYDS FSPHQEIISS RLSTLYQLPS MQRGVLIVPV NTLMQRVCPH
SYLHGHALVM KKGQRLSRDA LRAQLDSAGY RHVDQVMEHG EYATRGALLD LFPMGSEQPY
RLDFFDDEID SLRLFDADTQ RTLEEVEAIN LLPAHEFPTD KAAIELFRSQ WRDTFEVKRD
AEHIYQQVSK GTLPAGIEYW QPLFFSEPLP PLFSYFPANT LVVNTGSLET SAERFQADTL
ARFENRGVDP MRPLLPPEAL WLRVDELFSE LKRWPRLQLK TDHLPEKAAN TNLGFQKLPD
LAIQAQQKAP LDALRKFLES FSGPVIFSVE SEGRREALGE LLARIKIAPK RILRLDEAQD
AGRYLMIGAA EHGFIDTQRN LALICESDLL GERVARRRLD SRRTINPDTL IRNLAELHVG
QPVVHLEHGV GRYAGMTTLE AGGIKGEYLM LTYANDAKLY VPVSSLHLIS RYAGGAEESA
PLHKLGGDAW SRARQKAAEK VRDVAAELLD IYAQRAAKEG FAFKHDREQY QLFCDSFPFE
TTPDQAQAIN AVLSDMCQPL AMDRLVCGDV GFGKTEVAMR AAFLAVENHK QVAVLVPTTL
LAQQHYDNFR DRFANWPVRI EMLSRFRSAK EQTQILAEAA EGKIDILIGT HKLLQSDVKL
RDLGLLIVDE EHRFGVRHKE RIKAMRADVD ILTLTATPIP RTLNMAMSGM RDLSIIATPP
ARRLAVKTFV REYDSLVVRE AILREILRGG QVYYLYNDVE NIQKAAERLA ELVPEARIAI
GHGQMREREL ERVMNDFHHQ RFNVLVCTTI IETGIDIPTA NTIIIERADH FGLAQLHQLR
GRVGRSHHQA YAWLLTPHPK AMTTDAQKRL EAIASLEDLG AGFALATHDL EIRGAGELLG
EEQSGSMETI GFSLYMELLE NAVDALKAGR EPSLEDLTSQ QTEVELRMPS LLPDDFIPDV
NTRLSFYKRI ASAKNENELE EIKVELIDRF GLLPDPARNL LDIARLRQQA QKLGIRKLEG
NEKGGTIEFA EKNHVDPAWL IGLLQKQPQH FRLDGPTRLK FIQDLSERKT RIDWVRQFMQ
QLEENAIA