Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1306 |
Symbol | |
ID | 6485212 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 1292937 |
End bp | 1293575 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642736704 |
Product | hypothetical protein |
Protein accession | YP_002040461 |
Protein GI | 194446688 |
COG category | [R] General function prediction only |
COG ID | [COG3417] Collagen-binding surface adhesin SpaP (antigen I/II family) |
TIGRFAM ID | [TIGR02722] uncharacterized proteobacterial lipoprotein |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.123286 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.000000111415 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACAAAAA TGCATCGCTA CGCCGCCATC GCTGCGCTGG CGATATTTCT CTCCGGGTGT ATGGCGCAAC GTCAACCTGC GCCAGTTGAA GAGGTAAAAC CAGCGCCAGA ACAACCCGCG CAGCCACCAC AGCCTCCTGT CGTGCCGTCT GTGCCAACGA TTCCACAGCA ACCGGGGCCG ATCGAACATG AAGATCAAAC GGGCCAGCCA GCGCCTAAGG TGCGCCACTA TGACTGGAAC GGCGCGATGC AACCGCTGGT CAGCAAAATG TTGCAGGCTG ATGGCGTGAC GGCCGGAAAC GTATTGCTTG TCGACAGCGT GAATAACCGG ACGAATGGGT CATTAAATGC GAACGAGGCA ACGGAAACGT TACGTAATGC GCTGGCGAAC AACGGTAAAT TTACGCTGGT CTCCGTACAG CAACTCTCGA TGGCAAAACA GCAGTTAGGG TTGTCTCCGC AGGATAGTCT GGGAACGCGC AGTAAAGCTA TTGGCATTGC ACGCAATGTC GGGGCGCAAT ATGTACTTTA CTCCAGCGCA TCCGGTAACG TTAACGCGCC TGCATTACAG ATGCAGTTAA TGCTGGTGCA AACTGGCGAG ATAATCTGGT CAGGTAAAGG TGCGGTCCAA CAACAATAA
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Protein sequence | MTKMHRYAAI AALAIFLSGC MAQRQPAPVE EVKPAPEQPA QPPQPPVVPS VPTIPQQPGP IEHEDQTGQP APKVRHYDWN GAMQPLVSKM LQADGVTAGN VLLVDSVNNR TNGSLNANEA TETLRNALAN NGKFTLVSVQ QLSMAKQQLG LSPQDSLGTR SKAIGIARNV GAQYVLYSSA SGNVNAPALQ MQLMLVQTGE IIWSGKGAVQ QQ
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