Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1222 |
Symbol | |
ID | 6482253 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 1217614 |
End bp | 1218495 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 642736622 |
Product | RpiR family transcriptional regulator |
Protein accession | YP_002040380 |
Protein GI | 194445265 |
COG category | [K] Transcription |
COG ID | [COG1737] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 62 |
Fosmid unclonability p-value | 0.514843 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGCCTC AACCCCCACG TCTTAAACCC GGAAAAATCC TTGACACTCT GGGTGCTATG CAAAAAAGCC TGACACGTGC CTCCCAGCGT ATTGCGCAAT ATATTTTAGC CTTCCCCAGA CAGGTGACAC AGTCATCTAT TGCCGATTTG TCGCGCGACA CACAGGCCGG AGAAGCCACG GTTATTCGCT TTTGTCGCAC CCTGGGCTAT AAAGGTTTTC AGGATTTTAA AATGGACCTG GCCATTGAAC TTGCCACTAC CGAGTCTGAT GACAGTAGTC CTCTACTGGA TGCCGAAGTT AGCGAATCCG ACGATGCCCA CGCCATTGGT TTAAAATTGC AGAACACCAT TAGTAATGTA TTATCTGAAA CGCTAAATCT GCTTGATATG CAACAAGTTC TCGGTGTCGT GGACGCCCTA CGTCACTGTC ACTCAGTTTA TATCTTTGGT GTGGGCTCAT CGGGGATCAC GGCGCTGGAT ATGAAACACA AGCTAATGCG TATTGGTTTA CGGGGCGATG CGGTAAGCAA TAACCATTTT ATGTACATGC AGGCTACGCT ATTAAAAGCA GGCGATGTCG CGATGGGTGT CAGTCACTCG GGCACATCGC CAGAAACAGT GCATTCACTC CGATTGGCCC GACAGGCTGG CGCCACCACA GTCGCCATTA CCCATAATCT GGGTTCTCCA TTATGTGAAG AGGCCGATTT TTGCCTGATC AATGGTAATC GGCAAGGAAT GTTGCAGGGT GACTCGATCG GTACGAAAGC CGCGCAGCTT TTCGTCTTTG ACCTGCTCTA TACCCTTCTT GTACAGTCCT CGCCGGAACA GGCCCGAGAA AGCAAATTAC GGACAATGAA TGCCCTGGAC ATGACAAAAT AA
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Protein sequence | MEPQPPRLKP GKILDTLGAM QKSLTRASQR IAQYILAFPR QVTQSSIADL SRDTQAGEAT VIRFCRTLGY KGFQDFKMDL AIELATTESD DSSPLLDAEV SESDDAHAIG LKLQNTISNV LSETLNLLDM QQVLGVVDAL RHCHSVYIFG VGSSGITALD MKHKLMRIGL RGDAVSNNHF MYMQATLLKA GDVAMGVSHS GTSPETVHSL RLARQAGATT VAITHNLGSP LCEEADFCLI NGNRQGMLQG DSIGTKAAQL FVFDLLYTLL VQSSPEQARE SKLRTMNALD MTK
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