| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1218 |
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| Symbol | putA |
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| ID | 6485878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 1209935 |
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| End bp | 1213897 |
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| Gene Length | 3963 bp |
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| Protein Length | 1320 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642736620 |
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| Product | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
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| Protein accession | YP_002040378 |
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| Protein GI | 194443196 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
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| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.170223 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 0.434461 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAACCA CCACGATGGG GGTTAAGCTA GACGACGCCA CGCGCGAACG GATCAAAATG
GCCGCGTCGC GTATCGATCG CACGCCGCAC TGGTTAATAA AACAGGCAAT CTTTAGCTAT
CTGGACAAGC TGGAAAATAG CGATACGCTA CCGGAGCTAC CTGCGCTGTT TGCCGGCGCG
GCAAATGAAA GCGAGGAGCC GGTCGCGCCG CAGGATGAGC CGCATCAGCC CTTTCTGGAG
TTTGCCGAAC AGATTCTTCC CCAATCCGTC TCTCGCGCCG CCATCACCGC CGCCTGGCGC
CGCCCGGAAA CCGATGCGGT GTCAATGCTA ATGGAACAGG CGCGCCTGTC GCCGCCTGTC
GCTGAGCAGG CGCATAAACT TGCGTATCAA CTGGCGGAGA AATTGCGCAA TCAAAAATCC
GCCAGCGGTC GCGCGGGTAT GGTGCAAGGC CTGTTGCAGG AGTTTTCCCT CTCTTCGCAA
GAAGGCGTTG CGCTGATGTG TCTGGCGGAA GCGTTGCTGC GTATTCCCGA CAAAGCTACG
CGCGATGCGT TAATTCGCGA CAAAATCAGT AATGGCAACT GGCAGTCGCA TATTGGCCGT
AGCCCGTCGC TGTTTGTAAA CGCCGCCACC TGGGGGCTGC TCTTTACCGG CCGACTGGTC
TCAACGCATA ACGAAGCCAA TCTATCGCGC TCGCTGAACC GCATTATCGG CAAGAGCGGC
GAACCGTTAA TCCGCAAAGG CGTCGACATG GCGATGCGTT TAATGGGCGA GCAGTTCGTG
ACTGGTGAAA CCATTGCTCA GGCGCTGGCG AATGCCCGAA AACTGGAAGA GAAAGGGTTC
CGCTATTCTT ACGATATGCT GGGCGAAGCC GCGTTAACCG CCGCCGATGC GCAGGCTTAT
ATGGTCTCTT ACCAGCAAGC GATTCATGCC ATCGGCAAAG CGTCTAACGG TCGCGGTATT
TACGAAGGGC CAGGCATCTC GATTAAGCTG TCCGCCCTGC ATCCACGCTA TAGTCGCGCG
CAATACGATC GGGTAATGGA GGAGCTTTAT CCGCGCCTGA AATCCCTAAC GCTGCTGGCG
CGCCAGTACG ACATTGGTCT CAATATCGAC GCCGAAGAGG CGGATCGTCT GGAGATCTCG
CTCGATCTGC TGGAAAAACT CTGCTTCGAA CCCGAACTGG CGGGCTGGAA CGGCATTGGC
TTTGTGATCC AGGCTTACCA GAAACGCTGC CCGCTGGTCA TTGATTATTT AGTCGATCTG
GCCTCCCGTA GCCGCCGTCG GCTGATGATT CGTCTGGTGA AAGGCGCCTA CTGGGATAGC
GAAATCAAAC GCGCGCAAAT GGAAGGGCTG GAGGGCTATC CGGTTTATAC CCGCAAAGTG
TATACCGATG TCTCTTATCT GGCCTGCGCG AAAAAACTGC TCGCCGTCCC TAATCTGATC
TACCCGCAGT TCGCGACCCA TAACGCTCAC ACACTGGCGG CGATTTATCA TCTGGCCGGG
CAAAATTACT ATCCGGGTCA GTACGAATTC CAGTGCCTGC ACGGCATGGG CGAACCGCTG
TATGAACAGG TCACCGGTAA AGTAGCGGAC GGAAAACTTA ACCGTCCCTG CCGTATTTAC
GCGCCGGTGG GAACACACGA AACCCTGCTG GCCTATCTGG TACGACGCCT GCTGGAAAAC
GGCGCCAACA CCTCTTTTGT CAACCGCATC GCCGATGCTA CCCTACCGCT CGATGAACTG
GTGGCCGACC CGGTCGAGGC CGTGGAAAAA CTGGCGCAGC AGGAAGGTCA GGCTGGCATA
CCGCATCCGA AAATTCCGCT GCCGCGCGAT CTGTACGGCG AAGGTCGGAT AAACTCCGCC
GGACTTGATT TAGCGAATGA ACATCGCCTC GCCTCGCTCT CTTCTGCCCT GTTAAGCAAC
GCCATGCAGA AATGGCAGGC CAAACCTGTG CTGGAACAAC CGGTGGCCGA CGGTGAGATG
ACGCCGGTTA TCAACCCGGC GGAACCGAAA GATATTGTTG GCTGGGGACG CGAAGCGACA
GAAAGCGAGG TTGAACAGGC ATTGCAAAAC GCGGTCAATC AGGCGCCGGT TTGGTTTGCG
ACGCCGCCGC AAGAACGCGC CGCCATTTTG CAGCGGGCGG CGGTATTGAT GGAAGATCAA
ATGCAGCAGT TGATTGGCCT GTTGGTGCGT GAAGCGGGGA AAACGTTCAG CAACGCCATT
GCCGAAGTGC GCGAAGCGGT AGACTTCCTC CATTATTATG CCGGTCAAGT GCGTGACGAT
TTCGATAACG AAACGCATCG CCCGTTAGGG CCGGTAGTCT GCATCAGTCC GTGGAACTTC
CCGCTGGCCA TTTTCACCGG CCAAATCGCC GCCGCGCTGG CGGCAGGTAA CAGCGTTCTG
GCGAAACCGG CAGAGCAGAC ATCGCTGATT GCCGCCCAGG GCATTGCCAT TTTGCTGGAA
GCGGGCGTTC CGCCGGGCGT CGTGCAACTG TTGCCGGGAC GGGGAGAAAC CGTCGGCGCC
CAGCTTACCG CCGATGCGCG TGTACGCGGC GTGATGTTTA CCGGTTCCAC GGAGGTCGCG
ACGTTGTTGC AGCGCAACAT CGCCACGCGT CTTGACGCCC AGGGCCGCCC TATTCCGTTG
ATTGCGGAAA CCGGCGGTAT GAACGCTATG ATTGTCGACT CTTCCGCGCT CACCGAGCAG
GTGGTCGTGG ATGTGCTGGC TTCCGCTTTC GACAGCGCCG GACAACGCTG TTCCGCGCTC
CGCGTGCTGT GTTTACAGGA CGATATCGCC GAACATACGC TGAAAATGTT ACGCGGCGCG
ATGGCGGAGT GTCGGATGGG GAATCCAGGC CGTCTGACGA CCGATATCGG GCCGGTGATC
GATAGCGAGG CCAAAGCCAA CATTGAACGT CACATCCAGA CGATGCGCGC CAAAGGCCGC
GCGGTTTTCC AGGCCGCACG TGAAAACAGC GATGATGCGC AGGAATGGCG GACCGGTACG
TTTGTTATGC CCACGCTTAT TGAGCTGGAA AACTTCGCAG AACTGGAAAA AGAGGTCTTC
GGGCCCGTGC TGCACGTCGT GCGTTATAAC CGTAACCAAC TGGCGGAGCT TATCGAACAG
ATTAACGCTT CCGGCTACGG GCTAACGCTG GGCGTACATA CCCGTATTGA TGAAACCATT
GCGCAAGTCA CCGGTTCCGC CCATGTCGGC AACCTGTACG TTAACCGTAA TATGGTGGGC
GCGGTCGTCG GCGTCCAGCC GTTTGGCGGC GAAGGACTGT CCGGTACCGG GCCAAAAGCG
GGAGGGCCGC TCTATCTCTA CCGCCTGCTG GCACACCGCC CGCCCAATGC GCTCAATACG
ACGCTGACTC GTCAGGATGC GCGTTACCCG GTAGATGCGC AGCTTAAAAC CACGCTACTC
GCGCCGTTGA CCGCCCTGAC GCAATGGGCG GCGGATCGTC CAGCGCTACA GACGCTCTGC
CGACAATTCG CCGATCTGGC GCAGGCCGGC ACGCAGCGCC TGCTACCGGG ACCGACCGGC
GAGCGTAATA CCTGGACGCT GTTGCCGCGT GAACGGGTAT TATGCCTGGC TGATGACGAA
CAGGACGCGT TGACGCAGCT TGCCGCTGTT CTCGCCGTCG GCAGTCAGGC GCTATGGTCA
GACGACGCCT TCCACCGCGA TCTGGCGAAA CGTCTCCCCG CCGCCGTCGC GGCGCGTGTC
CAGTTTGCGA AAGCGGAAAC GCTGATGGCG CAGCCGTTTG ACGCGGTGAT TTTCCACGGC
GACTCCGACA AGCTGCGAAC CGTTTGCGAA GCCGTCGCCG CCCGCGAAGG CGCGATAGTG
TCGGTACAGG GGTTCGCCCG CGGCGAAAGC AATATGCTGC TGGAACGGCT CTATATTGAA
CGTTCGCTGA GCGTAAACAC TGCTGCCGCT GGCGGTAATG CCAGCCTGAT GACAATTGGC
TAA
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| Protein sequence | MGTTTMGVKL DDATRERIKM AASRIDRTPH WLIKQAIFSY LDKLENSDTL PELPALFAGA
ANESEEPVAP QDEPHQPFLE FAEQILPQSV SRAAITAAWR RPETDAVSML MEQARLSPPV
AEQAHKLAYQ LAEKLRNQKS ASGRAGMVQG LLQEFSLSSQ EGVALMCLAE ALLRIPDKAT
RDALIRDKIS NGNWQSHIGR SPSLFVNAAT WGLLFTGRLV STHNEANLSR SLNRIIGKSG
EPLIRKGVDM AMRLMGEQFV TGETIAQALA NARKLEEKGF RYSYDMLGEA ALTAADAQAY
MVSYQQAIHA IGKASNGRGI YEGPGISIKL SALHPRYSRA QYDRVMEELY PRLKSLTLLA
RQYDIGLNID AEEADRLEIS LDLLEKLCFE PELAGWNGIG FVIQAYQKRC PLVIDYLVDL
ASRSRRRLMI RLVKGAYWDS EIKRAQMEGL EGYPVYTRKV YTDVSYLACA KKLLAVPNLI
YPQFATHNAH TLAAIYHLAG QNYYPGQYEF QCLHGMGEPL YEQVTGKVAD GKLNRPCRIY
APVGTHETLL AYLVRRLLEN GANTSFVNRI ADATLPLDEL VADPVEAVEK LAQQEGQAGI
PHPKIPLPRD LYGEGRINSA GLDLANEHRL ASLSSALLSN AMQKWQAKPV LEQPVADGEM
TPVINPAEPK DIVGWGREAT ESEVEQALQN AVNQAPVWFA TPPQERAAIL QRAAVLMEDQ
MQQLIGLLVR EAGKTFSNAI AEVREAVDFL HYYAGQVRDD FDNETHRPLG PVVCISPWNF
PLAIFTGQIA AALAAGNSVL AKPAEQTSLI AAQGIAILLE AGVPPGVVQL LPGRGETVGA
QLTADARVRG VMFTGSTEVA TLLQRNIATR LDAQGRPIPL IAETGGMNAM IVDSSALTEQ
VVVDVLASAF DSAGQRCSAL RVLCLQDDIA EHTLKMLRGA MAECRMGNPG RLTTDIGPVI
DSEAKANIER HIQTMRAKGR AVFQAARENS DDAQEWRTGT FVMPTLIELE NFAELEKEVF
GPVLHVVRYN RNQLAELIEQ INASGYGLTL GVHTRIDETI AQVTGSAHVG NLYVNRNMVG
AVVGVQPFGG EGLSGTGPKA GGPLYLYRLL AHRPPNALNT TLTRQDARYP VDAQLKTTLL
APLTALTQWA ADRPALQTLC RQFADLAQAG TQRLLPGPTG ERNTWTLLPR ERVLCLADDE
QDALTQLAAV LAVGSQALWS DDAFHRDLAK RLPAAVAARV QFAKAETLMA QPFDAVIFHG
DSDKLRTVCE AVAAREGAIV SVQGFARGES NMLLERLYIE RSLSVNTAAA GGNASLMTIG
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