Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1031 |
Symbol | aspC |
ID | 6486172 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 1048891 |
End bp | 1050081 |
Gene Length | 1191 bp |
Protein Length | 396 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642736437 |
Product | aromatic amino acid aminotransferase |
Protein accession | YP_002040196 |
Protein GI | 194445730 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1448] Aspartate/tyrosine/aromatic aminotransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.643394 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 0.0066077 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTTGAGA ACATAACCGC CGCTCCTGCC GACCCGATTT TGGGCCTGGC CGATCTGTTT CGCGCCGATG ACCGTCCAGG GAAAATTAAC CTTGGCATTG GCGTATATAA AGATGAAACC GGCAAAACAC CGGTGCTCAC CAGCGTTAAA AAAGCCGAGC AGTATTTACT GGAAAATGAA ACGACGAAAA ACTATCTCGG CATTGACGGG ATTCCGGAAT TTGCTCGCTG CACTCAGGAA CTGCTGTTCG GCAAAGGCAG CGCGCTGATT AACGATAAGC GCGCACGCAC GGCGCAAACG CCGGGCGGTA CCGGCGCGTT ACGCATTGCC GCCGACTTTT TAGCAAAAAA TACTCCGGTA AAACGGGTGT GGGTGAGCAA CCCCAGCTGG CCGAACCACA AAAGCGTGTT TAACGCTGCC GGCCTGGAAG TTCGGGAGTA CGCTTACTAC GATGCGGAAA ATCACACGCT GGATTTTGAA GCGCTACAAG CCAGCCTGAG CGAAGCACAG GCCGGCGATG TGGTTCTGTT CCACGGTTGC TGTCATAACC CAACCGGCAT TGACCCTACT CTGGAACAGT GGCAGGTTCT GGCTGAGCTT TCCGTTGAAA AAGGGTGGCT GCCGCTATTC GATTTCGCTT ACCAGGGCTT TGCCCGCGGC CTGGAAGAAG ATGCGGAAGG TCTGCGCGCC TTTGCCGCGC TGCATAAAGA GCTCATTGTC GCCAGCTCCT ACTCCAAAAA CTTCGGCTTA TATAATGAGC GCGTCGGCGC CTGCACCCTC GTGGCTGCCG ATGCGGAAAC CGTGGATCGC GCTTTTAGCC AGATGAAATC CGCCATTCGC GCTAACTACT CCAACCCACC AGCGCACGGC GCGTCCATCG TCGCGACTAT CCTGAGTAAT GACGCCCTGC GCGCTATCTG GGAACAGGAA CTGACGGACA TGCGCCAGCG TATTCAGCGT ATGCGTCAAC TGTTCGTGAA TACCTTGCAG GAAAAAGGCG CGAACCGTGA CTTCAGCTTT ATTATCAAGC AGAACGGGAT GTTCTCATTC AGCGGTCTGA CCAAAGATCA GGTGCTGCGT CTGCGTGAAG AGTTTGGCGT TTATGCCGTG GCTTCTGGTC GCGTGAACGT GGCGGGCATG ACCCCGGATA ATATGGCGCC GCTGTGCGAA GCCATTGTCG CGGTACTGTA A
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Protein sequence | MFENITAAPA DPILGLADLF RADDRPGKIN LGIGVYKDET GKTPVLTSVK KAEQYLLENE TTKNYLGIDG IPEFARCTQE LLFGKGSALI NDKRARTAQT PGGTGALRIA ADFLAKNTPV KRVWVSNPSW PNHKSVFNAA GLEVREYAYY DAENHTLDFE ALQASLSEAQ AGDVVLFHGC CHNPTGIDPT LEQWQVLAEL SVEKGWLPLF DFAYQGFARG LEEDAEGLRA FAALHKELIV ASSYSKNFGL YNERVGACTL VAADAETVDR AFSQMKSAIR ANYSNPPAHG ASIVATILSN DALRAIWEQE LTDMRQRIQR MRQLFVNTLQ EKGANRDFSF IIKQNGMFSF SGLTKDQVLR LREEFGVYAV ASGRVNVAGM TPDNMAPLCE AIVAVL
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