Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A0990 |
Symbol | cydD |
ID | 6483839 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 993791 |
End bp | 995557 |
Gene Length | 1767 bp |
Protein Length | 588 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642736396 |
Product | cysteine/glutathione ABC transporter membrane/ATP-binding component |
Protein accession | YP_002040155 |
Protein GI | 194442502 |
COG category | [C] Energy production and conversion [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components |
TIGRFAM ID | [TIGR02857] thiol reductant ABC exporter, CydD subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.305306 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 70 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAAAA CCCGTCAAAA AGAGCTGACC CGCTGGTTAA AACAGCAAAG CGTAATCTCC CAACGGTGGT TGAATATTTC CCGCCTGTTG GGGTTCATGA GTGGCGTATT AATTGTCGCT CAGGCCTGGA TCATGGCGCG TATCCTGCAA CATATGATCA TGGAGAACAT TCCACGGGAA GCGCTGTTGC TCCCTTTTAT CCTGCTGATA CTGGTCTTTG TCCTCCGCGC CTGGGTGGTG TGGTTGCGCG AGCGCGTCGG TTTTCATGCC GGACAACATA TTCGCTTTGA GATCCGCCGT CAGGTGTTGG ATCGTCTGCA GCAAGCCGGC CCAGCCTGGA TTCAGGGCAA GCCCGCCGGT AGCTGGGCGA CGCTGGTATT GGAACAGATT GACGATATGC ATGACTATTA TGCGCGCTAT CTGCCGCAAA TGGCGCTTGC CGTTTGCGTA CCGCTCTTAA TCGTGGCGGC GATTTTCCCG TCAAATTGGG CGGCGGCGCT GATTCTGCTG GGCACCGCCC CGCTCATTCC CCTATTTATG GCGATGGTGG GGATGGGCGC GGCTGACGCC AACCGCCGCA ATTTCCTGGC GCTTGCCCGG CTAAGCGGCC ATTTTCTTGA CCGTCTGCGC GGGATGGAAA CGCTGCGAAT TTTCGGTCGT GGAGAAGCGG AAACCGAGAG CATTCGCGCA GCATCGCAGG ATTTTCGTCA GCGCACGATG GAAGTACTGC GCCTCGCCTT TTTATCTTCC GGCGTGCTGG AATTTTTCAC CTCGCTTTCT ATTGCGCTGG TCGCCGTTTA TTTTGGCTTC TCTTACCTGG GCGAGCTGAA CTTTGGTCAT TACGGTACCG GCGTGACGCT GGCCGCCGGG TTCCTCGCCT TGATCCTCGC GCCGGAGTTT TTCCAGCCAT TACGCGACCT CGGCACGTTT TATCATGCTA AGGCGCAGGC GGTTGGCGCG GCGGATAGTC TGAAGACATT TCTGGAAACA CCCCTCGCCC ACCCGGCGCG CGGCGAAGTT GAGCTGGCGG AAAACGAACC TGTAACCATT GACGCAGTCA ATCTTATTAT CACCTCGCCA GAAGGCAAAA CGCTTGCCGG GCCGCTGAAT TTCTCATTAG CGGCACGAGA ACGCGCCGTC CTGGTAGGAC GCAGCGGTTC CGGTAAAAGC TCTCTGTTGA ATGTATTATC CGGTTTTCTC TCCTATCAGG GATCTTTGCG TATTAACGGT GTCGAGCTTC GCGATCTCTC GCCGGAATCC TGGCGCCAGC ATCTCTCCTG GGTTGGGCAA AACCCGCAAT TACCTGCAGC GACGCTACGC GAAAATGTAT TACTGGCGCG CCCGGACGCC AGCGAGCAGG AACTTTATGC CGCGCTTGAC GCCGCATGGG TAAGCGAGTT TTTACCGCTG CTGCCGCAGG GAGTAGACAC CCCGCTCGGC AATCATGCCA GCAGACTTTC CGTCGGCCAG GCACAGCGTG TAGCGGTCGC CCGTGCGCTA CTTAATCCCT GTCAACTGCT ACTGCTGGAT GAACCGGCGG CAAGCCTGGA CGCTCACAGC GAGCAACGCG TCATGCAGGC GTTAAAAGCG GCGTCAAAAC GCCAGACCAC ATTAATGGTG ACGCATCAGT TGGAAGATCT CGCCGACTGG GACGCTATCT GGGTTATGCA AGATGGCGCG ATTGTCGAAC AAGGCAGTTA TGCTGAACTC AGCGCCGCCA ACGGCGCTTT TGCGACGTTA TTGGCTCACC GTCAGGAGGA TATTTAA
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Protein sequence | MNKTRQKELT RWLKQQSVIS QRWLNISRLL GFMSGVLIVA QAWIMARILQ HMIMENIPRE ALLLPFILLI LVFVLRAWVV WLRERVGFHA GQHIRFEIRR QVLDRLQQAG PAWIQGKPAG SWATLVLEQI DDMHDYYARY LPQMALAVCV PLLIVAAIFP SNWAAALILL GTAPLIPLFM AMVGMGAADA NRRNFLALAR LSGHFLDRLR GMETLRIFGR GEAETESIRA ASQDFRQRTM EVLRLAFLSS GVLEFFTSLS IALVAVYFGF SYLGELNFGH YGTGVTLAAG FLALILAPEF FQPLRDLGTF YHAKAQAVGA ADSLKTFLET PLAHPARGEV ELAENEPVTI DAVNLIITSP EGKTLAGPLN FSLAARERAV LVGRSGSGKS SLLNVLSGFL SYQGSLRING VELRDLSPES WRQHLSWVGQ NPQLPAATLR ENVLLARPDA SEQELYAALD AAWVSEFLPL LPQGVDTPLG NHASRLSVGQ AQRVAVARAL LNPCQLLLLD EPAASLDAHS EQRVMQALKA ASKRQTTLMV THQLEDLADW DAIWVMQDGA IVEQGSYAEL SAANGAFATL LAHRQEDI
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