| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0955 |
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| Symbol | rumB |
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| ID | 6485402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 957446 |
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| End bp | 958576 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 642736362 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_002040122 |
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| Protein GI | 194443652 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 109 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGTGCG CACTCTATGA CGCGGGTCGC TGCCGTTCCT GTCAATGGAT TACGCAGTCG
GTTAACGAAC AACTTTCCGC AAAAACAGCC GATTTACATC GTTTGCTGGC CGGGCTGCCT
GTTGAACAGT GGTGCGCGCC GATTAGCGGC CCGGAACAGC ATTTCCGCAA CAAAGCGAAA
ATGGTCGTGA GCGGTAGTGT AGAAAAACCG CTCTTCGGGA TGCTGCATCG CGACGGTACG
CCGGTCGATC TTTGCGCTTG CCCGCTGTAT CCCGCCTCCT TTGCCCCCGT ATTCAGCACG
CTAAAACCTT TTATTGCCCG TGCCGGACTC ACGCCTTATA ACGTGGCGCG AAAACGCGGC
GAACTGAAAT ACCTGTTGCT GACGGAAAGT CAGTTCGATG GCGGCATGAT GCTACGCTTC
GTGTTGCGTT CAGAAACCAA ACTTACGCAA CTGCGCGCGG CGTTACCGTG GCTGCGCGCG
CAACTGCCGC AGCTCAGGGT GATCACCGCA AATATTCAGC CGGTACATAT GGCGATTATG
GAAGGGGAGA CGGAAATCTA CCTGACGGAT CAGCAGGCGC TGGCGGAACG TTTTAACGAT
GTGCCGCTGT GGATTCGTCC GCAAAGTTTC TTTCAGACCA ACCCTACGGT CGCCAGCCGA
TTATATGCAA CGGCGCGCGA TTGGGTAGGG CAACTGCCGG TACGCCATAT GTGGGATCTT
TTTTGCGGAG TGGGCGGATT CGGCCTGCAC TGCGCGACGC CGCAGATGCA ATTAACCGGT
ATTGAGATCG CGCCGGAGGC GATTGCCTGC GCGAAGCAAT CCGCTGCCGA GCTGGGATTG
ACCCGCCTTC ATTTCCAGGC GCTGGATTCC ACCCAATTCG CCATCGCACA AGGCGAAACG
CCCGACCTGG TATTGGTGAA TCCTCCCCGC CGCGGCATTG GCAAGCCGTT GTGCGATTAC
CTTGCACAAA TGGCGCCGCG TTTTATCATT TATTCAAGCT GTAACGCGCA GACGATGGCG
CAGGATATTC GCCATCTTCC GAACTACCGT ATTCAACGTG TTCAGCTTTT CGATATGTTC
CCGCATACCG CGCATTATGA GGTTTTAACG TTACTGCGCA GGTCAATATA A
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| Protein sequence | MQCALYDAGR CRSCQWITQS VNEQLSAKTA DLHRLLAGLP VEQWCAPISG PEQHFRNKAK
MVVSGSVEKP LFGMLHRDGT PVDLCACPLY PASFAPVFST LKPFIARAGL TPYNVARKRG
ELKYLLLTES QFDGGMMLRF VLRSETKLTQ LRAALPWLRA QLPQLRVITA NIQPVHMAIM
EGETEIYLTD QQALAERFND VPLWIRPQSF FQTNPTVASR LYATARDWVG QLPVRHMWDL
FCGVGGFGLH CATPQMQLTG IEIAPEAIAC AKQSAAELGL TRLHFQALDS TQFAIAQGET
PDLVLVNPPR RGIGKPLCDY LAQMAPRFII YSSCNAQTMA QDIRHLPNYR IQRVQLFDMF
PHTAHYEVLT LLRRSI
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