| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0948 |
|---|
| Symbol | rimK |
|---|
| ID | 6482821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 950895 |
|---|
| End bp | 951797 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642736355 |
|---|
| Product | ribosomal protein S6 modification protein |
|---|
| Protein accession | YP_002040115 |
|---|
| Protein GI | 194443283 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0189] Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) |
|---|
| TIGRFAM ID | [TIGR00768] alpha-L-glutamate ligases, RimK family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 107 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAAATTG CCATATTGTC CAGGGATGGA ACGCTCTATT CTTGCAAACG TCTGCGCGAA
GCGGCGATGC GGCGCGGCCA TCTGGTCGAG ATACTCGATC CTCTTTCCTG CTATATGAAT
ATTAATCCGG CTGCGTCGTC GATCCATTAC AAGGGGCGTC GTCTGCCCCA TTTTGACGCC
GTTATTCCCC GTATTGGTTC GGCCATTACC TTTTATGGTA CCGCTGCGCT ACGTCAGTTT
GAGCTACTGG GTAGCTATCC GCTGAATGAA TCCGTCGCTA TTACCCGCGC GCGCGATAAG
CTGCGATCGC TACAACTTCT GGCGCGCCAG GGGATCGATC TCCCCATTAC CGGGATCGCC
CATTCGCCGG ATGATACCAG CGATCTTATT AAGATGGTTG GCGGGGCGCC GCTGGTCGTG
AAGCTGGTAG AAGGCACGCA AGGGATCGGC GTGGTATTGG CGGAGACGCG TCAGGCTGCT
GAAAGCGTTA TTGATGCGTT TCGGGGGCTG AATGCCCATA TCCTGGTTCA GGAATACATT
GCCGAAGCTA AAGGATGCGA TATTCGTTGT CTGGTCGTCG GCAATGAGGT TGTGGCGGCG
ATTGAGCGGT GCGCGAAAGC CGGTGATTTT CGCTCCAATC TTCATCGTGG CGGGGTGGCC
AGCATCGCGA CGATCACGCC TCGTGAACGG GATATCGCCA TCAAAGCCGC ACAAACGCTG
GGGCTGGATG TGGCGGGCGT CGATATTTTA CGCGCCGCGC GCGGGCCGCT GGTGATGGAG
GTGAATGCCT CGCCGGGACT GGAAGGTATC GAAAAGACTA CGGGCGTAGA TATCGCGGGG
CGAATGATTC AGTGGATAGA ACGTCACGCT ACACCTGAAT TTTGCCTTAA AATCGGCGGC
TAA
|
|---|
| Protein sequence | MKIAILSRDG TLYSCKRLRE AAMRRGHLVE ILDPLSCYMN INPAASSIHY KGRRLPHFDA
VIPRIGSAIT FYGTAALRQF ELLGSYPLNE SVAITRARDK LRSLQLLARQ GIDLPITGIA
HSPDDTSDLI KMVGGAPLVV KLVEGTQGIG VVLAETRQAA ESVIDAFRGL NAHILVQEYI
AEAKGCDIRC LVVGNEVVAA IERCAKAGDF RSNLHRGGVA SIATITPRER DIAIKAAQTL
GLDVAGVDIL RAARGPLVME VNASPGLEGI EKTTGVDIAG RMIQWIERHA TPEFCLKIGG
|
|---|
| |