Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A0900 |
Symbol | |
ID | 6483695 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 904432 |
End bp | 906012 |
Gene Length | 1581 bp |
Protein Length | 526 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642736312 |
Product | inner membrane protein YbiP |
Protein accession | YP_002040072 |
Protein GI | 194445944 |
COG category | [R] General function prediction only |
COG ID | [COG2194] Predicted membrane-associated, metal-dependent hydrolase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 78 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTCAA CCCTTATCGA TTCACTTCTG GCCCGTCGTC GGGCTGTAAG CCCGTGGGCG GGCCTCTACT TTTTACAGTC GCTGCTGATT AACCTCGCGC TCGGCTACCC CTTTAGCCTG CTTTATACCG CGGCGTTTAC CTGCCTGTTG CTGTTGCTCT GGCGCTACCT GCCCCGCGGA CAAAAAGCGC TGCTCGGCAT CTGTTCGCTG GTAGCCGCTT GCTATTTTCC CTTTGGCCAG GCTTACGGCG CGCCGAACTT TAATACGCTG CTGGCGCTGC ACTCCACCAA TATGGAAGAG TCGAGCGAAA TCCTGACCAT CTTCCCGTGG TATAGCTACC TGACCGGACT TTTTATTTTT GCGCTGGGTA TTATTGCGCT TCGCCGCCGA AAAGAAGAGG TCAGGCCGCG CTGGAATAGC CTCGACAGCC TGTGCCTGCT GATCAGCGTC GCGGCATTTT TCGTCGCGCC GATACAAAAT CTGGCCTGGG GCGGCGTTTT TAAGGTTATT GATACCGGCT ATCCGGTTTT TCGCTTCGCC AAAGACGTTA TCGTCAATAA CAACGAAGTC ATTGAAGAGC AGCACCGTAT GGCGCAGCTA TCCGGCATAA AAGATAGCTG GACGGTTACT GCGGTGAAAC CCAGATATCA CATCTATGTC GTGGTGATTG GTGAAAGCGC GCGACGGGAT GCCATGGGCG CTTTCGGCGG CCACTGGGAT AATACCCCCT TCGCCAGCCA TGTGAATGGC GACTTCTTTA TGGATTACAT CGCCGCCAGC GGCTCAACGC AAAAATCGCT CGGTTTAACG CTCAATCGCG TGGTGGATAA CAAACCGCAG TATCAGGATA ATTTCGTCAC GCTGGCTAAC CGCGCCGGTT TTCAGACATG GTGGTTTTCC AATCAGGGGC AAATCGGCGA ATACGACACG GCCATCGCCA GTATCGCCAA ACGCGCCGAT GAAGCGCATT TCCTGAAAAA CGGCGATTTT GAAGCGGATA AAAATACTCG CGACGAAGCG CTGTTAACCA TGACGGCGCA GGTATTGGCG ACAGAACGCA CGCAACCGCA GTTGATTGTG TTGCATTTAA TGGGGTCGCA TCCCCAGGCC TGCGACCGTA CTCAGGGAAA ATACGCGACG TTTGTCCAGT CGAAAGAGAC GTCTTGTTAT TTATACACCA TGACGCAAAC CGACGATTTG CTCCGTCAGC TCTATACTCA GCTTCGTCAT AGCGGCGACA GTTTTTCGCT CGTCTATTTC TCCGATCACG GGCTGGCGTT TAAAGAACGC GGCAAAGCGG TACAGTACCT GGCGCATGAC GACAAATTCC AGCAAAACTT CCAGGTGCCG TTTATGGTGC TATCCAGCGA CAGTAAAGCG CATCGGATCA TTAAAGCTCG CCGTTCCGCG AACGATTTCC TGAGTTTTTT CTCGCAATGG ACAGGAATTA GCGCTAAAGA GATCAAAAAT CGCTATCGAT TTATTTCGGA ACAGAAAGCC GGGCCCGTTT ATATCACCAA TTTCAAATTA CAGAAAGTGG ACTATAACCA TCTGGGCAGC GATATTTTTT CACTAAAATA A
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Protein sequence | MNSTLIDSLL ARRRAVSPWA GLYFLQSLLI NLALGYPFSL LYTAAFTCLL LLLWRYLPRG QKALLGICSL VAACYFPFGQ AYGAPNFNTL LALHSTNMEE SSEILTIFPW YSYLTGLFIF ALGIIALRRR KEEVRPRWNS LDSLCLLISV AAFFVAPIQN LAWGGVFKVI DTGYPVFRFA KDVIVNNNEV IEEQHRMAQL SGIKDSWTVT AVKPRYHIYV VVIGESARRD AMGAFGGHWD NTPFASHVNG DFFMDYIAAS GSTQKSLGLT LNRVVDNKPQ YQDNFVTLAN RAGFQTWWFS NQGQIGEYDT AIASIAKRAD EAHFLKNGDF EADKNTRDEA LLTMTAQVLA TERTQPQLIV LHLMGSHPQA CDRTQGKYAT FVQSKETSCY LYTMTQTDDL LRQLYTQLRH SGDSFSLVYF SDHGLAFKER GKAVQYLAHD DKFQQNFQVP FMVLSSDSKA HRIIKARRSA NDFLSFFSQW TGISAKEIKN RYRFISEQKA GPVYITNFKL QKVDYNHLGS DIFSLK
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