| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0599 |
|---|
| Symbol | |
|---|
| ID | 6482959 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 610428 |
|---|
| End bp | 613040 |
|---|
| Gene Length | 2613 bp |
|---|
| Protein Length | 870 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642736016 |
|---|
| Product | fimbrial usher protein |
|---|
| Protein accession | YP_002039790 |
|---|
| Protein GI | 194442998 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 0.0484781 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGA CAACCTGGTT TGCAGGGCGA TTTCCCGGCT ATGTATCACC GTTAAACGGC
GTGGCGCTGT CGGTGTTGGC GGCGCTGTGT CCGCTGACGA GCCGCGGCGA AAGTTATTTC
AACCCTGCGT TTTTGTCGGC GGATACCGCG TCCGTGGCGG ATTTATCTCG CTTTGAAAAA
GGTAATCATC AGCCTCCCGG TATTTACCGG GTGGATATCT GGCGTAACGA CGAATTCGTA
GCGACGCAGG ATATCCGTTT TGAGGCGGGC GCCGTGGGCG CCGGTGATAA ATCCGGCGGC
CTGATGCCTT GTTTTACACC GGAGTGGATT AAACGGCTGG GCGTGAATAC CGCGGTGTTC
CCTGTCTCAG ATAAAGACGT CGATACCACG TGTATTCACC TTCCTGAGAA AATCCCGGGC
GCGGAGGTCG CGTTTGATTT CGCGTCGATG CGCTTAAATA TTAGCTTGCC GCAGGCGTCA
TTGCTCAACA GCGCGCGTGG CTATATCCCG CCGGAAGAGT GGGATGAAGG GATACCCGCC
GCACTCATTA ATTACAGTTT TACCGGTAGC CGCGGAACAG ACAGCGATAG CTATTTTTTG
AGTCTGCTGA GCGGGTTGAA CTATGGCCCC TGGCGGCTGC GTAATAACGG AGCCTGGAAC
TATTCGAAAG GGGACGGCTA TCATTCGCAA CGCTGGAACA ACATTGGCAC CTGGGTACAG
CGCGCCATCA TTCCGCTAAA AAGCGAACTG GTCATGGGGG ACAGCAATAC CGGGAACGAT
GTTTTCGACA GCGTCGGCTT TCGCGGAGCG CGGCTGTACT CTTCTGACAA TATGTATCCC
GATAGCCTGC AGGGCTACGC CCCCACGGTT AGAGGAATCG CCCGGACGGC GGCAAAGCTG
ACGATACGAC AGAACGGGTA TGTTATCTAC CAAAGCTATG TGTCGCCGGG CGCGTTTGCG
ATTACCGATC TTAATCCTAC CTCTTCCAGC GGCGACCTTG AGGTGACGGT AGATGAAAAA
GACGGTAGCC AACAACGTTA CACGGTGCCT TACTCTACCG TTCCGCTATT GCAGCGTGAG
GGCAGGGTGA AGTATGACCT GGTGGCCGGG GATTTTCGCA GCGGCAATAG TCAGCAGTCT
TCGCCATTCT TTTTCCAGGG AACGGTGATT GCCGGCCTGC CTGCGGGGCT GACGGCTTAC
GGTGGTACGC AACTTGCCGA TCGTTACCGT GCCGTGGTGG TCGGGGCGGG GCGAAATTTG
GGCGACTGGG GTGCCGTGTC GGTCGATGTC ACACATGCGC GTAGCCAACT GGCAGATGAC
AGCACCCATC AGGGGCAATC GTTGCGTTTT CTGTACGCCA AATCGCTGAA TAATTACGGG
ACTAATTTTC AATTGCTGGG TTACCGCTAT TCCACGCGCG GATTTTACAC CCTGGATGAT
GTGGCATACC GCAGTATGGA AGGGTACGAC TACGAATACG ATAGCGACGG ACGCCGCCAT
AAAGTGCCGG TGGCGCAGAG CTACCACAAT CTCCGCTACA GCAAAAAAGG CCGCTTTCAG
GTCAATATTT CGCAAAACCT GGGGGATTAC GGGTCACTGT ATCTTTCCGG CAGTCAACAA
AATTACTGGA ATACGCCGGA TACCAATACC TGGTATCAAC TGGGATACGC CAGTGGATGG
CAAGGCATAA GTTATTCGCT GTCATGGTCG TGGAACGAGT CGGTGGGGAT CTCAGGCGCC
GACCGCATTC TGGCATTCAA TATGTCCGTT CCGTTTAGCG TTCTGACCGG ACGGCGCTAT
GCGCGCGACA CTATTCTTGA TCGTACTTAT GCCACGTTTA ACGCCAACCG CAACCGCGAC
GGCGACAATA GCTGGCAGAC CGGCGTGGGC GGCACGCTTC TGGAAGGACG TAATCTGAGC
TACAGCGTGA CGCAGGGGCG TAGCAGTACC AATGGTCATA GCGGCAGCGC CAGCGCTAGC
TGGCAGGCGA CGTATGGCAC GCTGGGCGTG GGATATAACT ACGATCGCGA TCAGCATGAC
TATAACTGGC AACTTTCCGG CGGCGTGGTC GGTCATGCGG ATGGTATTAC GTTTAGCCAA
CCGTTGGGCG ATACCAATGT CTTGATTAAA GCGCCGGGAG CGAAAGGCGT GCGCATCGAA
AACCAGACCG GCGTGAAAAC GGACTGGCGG GGCTATGCGG TAATGCCCTA CGCCACGGTA
TATCGCTATA ACCGCGTCGC GTTAGATACC AACACGATGG ACAACCATAC CGATGTCGAA
AATAACGTCA GCAGCGTGGT GCCGACTGAA GGCGCGCTGG TGCGGGCTGC TTTTGATACG
CGGATAGGCG TAAGGGCAAT CATTACCGCG AGGCTTGGCG GACGTCCGTT ACCGTTTGGC
GCGATAGTAC GAGAAACCGC CAGCGGCATT ACCAGCATGG TCGGCGATGA CGGACAAATT
TATCTGAGCG GCTTGCCGCT AAAAGGTGAA CTGTTCATCC AGTGGGGAGA GGGGAAAAAC
GCGCGTTGTA TCGCCCCTTA CGCCCTGGCG GAGGATAGCC TGAAGCAGGC GATTACGATA
GCCAGCGCGA CCTGTATCCG TCCGTCGTCA TAA
|
|---|
| Protein sequence | MKKTTWFAGR FPGYVSPLNG VALSVLAALC PLTSRGESYF NPAFLSADTA SVADLSRFEK
GNHQPPGIYR VDIWRNDEFV ATQDIRFEAG AVGAGDKSGG LMPCFTPEWI KRLGVNTAVF
PVSDKDVDTT CIHLPEKIPG AEVAFDFASM RLNISLPQAS LLNSARGYIP PEEWDEGIPA
ALINYSFTGS RGTDSDSYFL SLLSGLNYGP WRLRNNGAWN YSKGDGYHSQ RWNNIGTWVQ
RAIIPLKSEL VMGDSNTGND VFDSVGFRGA RLYSSDNMYP DSLQGYAPTV RGIARTAAKL
TIRQNGYVIY QSYVSPGAFA ITDLNPTSSS GDLEVTVDEK DGSQQRYTVP YSTVPLLQRE
GRVKYDLVAG DFRSGNSQQS SPFFFQGTVI AGLPAGLTAY GGTQLADRYR AVVVGAGRNL
GDWGAVSVDV THARSQLADD STHQGQSLRF LYAKSLNNYG TNFQLLGYRY STRGFYTLDD
VAYRSMEGYD YEYDSDGRRH KVPVAQSYHN LRYSKKGRFQ VNISQNLGDY GSLYLSGSQQ
NYWNTPDTNT WYQLGYASGW QGISYSLSWS WNESVGISGA DRILAFNMSV PFSVLTGRRY
ARDTILDRTY ATFNANRNRD GDNSWQTGVG GTLLEGRNLS YSVTQGRSST NGHSGSASAS
WQATYGTLGV GYNYDRDQHD YNWQLSGGVV GHADGITFSQ PLGDTNVLIK APGAKGVRIE
NQTGVKTDWR GYAVMPYATV YRYNRVALDT NTMDNHTDVE NNVSSVVPTE GALVRAAFDT
RIGVRAIITA RLGGRPLPFG AIVRETASGI TSMVGDDGQI YLSGLPLKGE LFIQWGEGKN
ARCIAPYALA EDSLKQAITI ASATCIRPSS
|
|---|
| |