| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0489 |
|---|
| Symbol | cyoB |
|---|
| ID | 6486138 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 499584 |
|---|
| End bp | 501575 |
|---|
| Gene Length | 1992 bp |
|---|
| Protein Length | 663 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642735910 |
|---|
| Product | cytochrome o ubiquinol oxidase subunit I |
|---|
| Protein accession | YP_002039684 |
|---|
| Protein GI | 194442831 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
|---|
| TIGRFAM ID | [TIGR02843] cytochrome o ubiquinol oxidase, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0274597 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 0.00372711 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGGAA AATTATCACT GGATGCAGTA CCGTTCCATG AACCTATCGT CATGGTAACG
ATCGCTGCAA TTATCGTCGG GGGACTGGCG ATACTGGCAG CGATTACTTA CTTCGGTAAG
TGGACCTACC TATGGAAAGA GTGGTTAACG TCGGTTGACC ATAAACGCCT CGGCATCATG
TATATCATCG TCGCGATTGT GATGCTGTTA CGTGGTTTCG CCGATGCCAT CATGATGCGT
AGCCAGCAGG CGCTTGCCTC CGCAGGCGAA GCGGGTTTTC TACCGCCGCA CCACTACGAT
CAGATCTTTA CCGCTCACGG CGTAATCATG ATCTTCTTCG TGGCGATGCC CTTCGTTATC
GGTCTGATGA ACCTGGTGGT TCCGCTGCAG ATCGGCGCGC GCGACGTTGC TTTCCCTTTC
CTGAACAACC TGAGCTTCTG GTTCACCGTT GTCGGCGTTA TTCTGGTTAA CCTCTCGCTG
GGCGTGGGTG AATTCGCGCA GACAGGGTGG CTGGCTTATC CGCCGCTATC GGGAATAGAG
TACAGTCCCA GCGTCGGGGT CGATTACTGG ATATGGGCGT TGCAACTCTC GGGTATTGGT
ACGACGTTAA CCGGTATCAA CTTCTTCGTG ACGATCCTGA AGATGCGTGC GCCGGGTATG
ACAATGTTCA AGATGCCGGT CTTTACCTGG GCCTCTTTGT GCGCCAACGT ACTGATCATC
GCCTCTTTCC CGATTCTGAC GGTTACCGTC GCGTTGCTGA CCCTGGATCG CTATCTGGGC
ACCCATTTCT TTACCAACGA TATGGGCGGC AACATGATGA TGTACATCAA CCTGATTTGG
GCCTGGGGCC ATCCGGAAGT GTACATTCTG ATTCTGCCGG TCTTCGGGGT ATTCTCCGAA
ATCGCAGCGA CCTTCTCGCG TAAACGTCTG TTCGGCTATA CCTCGCTGGT TTGGGCGACC
GTCTGTATTA CCGTACTGTC GTTTATCGTT TGGCTGCACC ACTTCTTCAC GATGGGCGCG
GGCGCGAACG TTAACGCCTT CTTCGGTATC ACCACCATGA TTATCGCCAT CCCGACCGGG
GTGAAGATCT TCAACTGGTT GTTCACCATG TATCAGGGCC GTATCGTCTT CCATTCCGCA
ATGATGTGGA CCATTGGCTT TATCGTGACC TTCTCGGTCG GCGGTATGAC CGGCGTTCTG
CTGGCGGTAC CGGGCGCGGA CTTCGTCCTG CACAACAGTC TGTTTCTGAT TGCGCACTTC
CATAACGTGA TCATCGGCGG CGTGGTGTTT GGCTGCTTCG CAGGTATGAC CTACTGGTGG
CCGAAGGCGT TTGGCTTCAA GCTGAACGAA ACCTGGGGTA AACGCGCCTT CTGGTTCTGG
ATTATCGGTT TCTTTGTAGC CTTTATGCCG CTGTACGTAC TGGGCTTCAT GGGCATGACC
CGTCGCCTCA GCCAGCAAAT TGATCCGCAG TTCCATACGA TGCTGATGGT TGCCGCCGCC
GGCGCCGCGC TGATTGCGCT GGGTATCCTG TGTCAACTGA TTCAGATCTT CGTTTCTATT
CGCGACCGCG ATCAGAACCG CGATCTGACC GGCGACCCAT GGGGTGGCCG TACGCTGGAA
TGGTCAACCT CGTCTCCGCC GCCGTTCTAT AACTTTGCCG TTGTGCCGCA CGTTCACGAA
CGTGACGCCT TCTGGGAAAT GAAAGAAAAA GGCGAAGCGT ACCAACAGCC TGGACAGTAT
GAAGAGATTC ATATGCCGAA AAATAGCGGT GCCGGTATTG TTATCGCCGC CTTCGCGACG
GTATTTGGCT TCGCCATGAT CTGGCATATC TGGTGGCTGG CGATAGTGGG TTTCGCAGGC
ATGATCATCA GCTGGATTGT AAAAAGCTTT GATGAAGATG TGGATTACTA CGTGCCGGTC
CCGGAAGTCG AAAAACTGGA AAACCAGCAT TTCGATGAGA TTACTAAGGC AGGGCTGAAA
AATGGCAACT GA
|
|---|
| Protein sequence | MFGKLSLDAV PFHEPIVMVT IAAIIVGGLA ILAAITYFGK WTYLWKEWLT SVDHKRLGIM
YIIVAIVMLL RGFADAIMMR SQQALASAGE AGFLPPHHYD QIFTAHGVIM IFFVAMPFVI
GLMNLVVPLQ IGARDVAFPF LNNLSFWFTV VGVILVNLSL GVGEFAQTGW LAYPPLSGIE
YSPSVGVDYW IWALQLSGIG TTLTGINFFV TILKMRAPGM TMFKMPVFTW ASLCANVLII
ASFPILTVTV ALLTLDRYLG THFFTNDMGG NMMMYINLIW AWGHPEVYIL ILPVFGVFSE
IAATFSRKRL FGYTSLVWAT VCITVLSFIV WLHHFFTMGA GANVNAFFGI TTMIIAIPTG
VKIFNWLFTM YQGRIVFHSA MMWTIGFIVT FSVGGMTGVL LAVPGADFVL HNSLFLIAHF
HNVIIGGVVF GCFAGMTYWW PKAFGFKLNE TWGKRAFWFW IIGFFVAFMP LYVLGFMGMT
RRLSQQIDPQ FHTMLMVAAA GAALIALGIL CQLIQIFVSI RDRDQNRDLT GDPWGGRTLE
WSTSSPPPFY NFAVVPHVHE RDAFWEMKEK GEAYQQPGQY EEIHMPKNSG AGIVIAAFAT
VFGFAMIWHI WWLAIVGFAG MIISWIVKSF DEDVDYYVPV PEVEKLENQH FDEITKAGLK
NGN
|
|---|
| |