Gene SNSL254_A0453 details

Gene Information

• Locus tag: SNSL254_A0453
• Symbol: secD
• ID: 6484898
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Newport str. SL254
• Kingdom: Bacteria
• Replicon accession: NC_011080
• Strand: +
• Start bp: 466734
• End bp: 468581
• Gene Length: 1848 bp
• Protein Length: 615 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 642735875
• Product: preprotein translocase subunit SecD
• Protein accession: YP_002039649
• Protein GI: 194445387
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 100
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGTTAAACC GTTATCCTTT GTGGAAGTAC ATCATGCTGG TCGTCGTGAT TATCGTCGGC 
CTGCTTTACG CACTTCCCAA CCTGTATGGT GAGGATCCGG CTGTTCAAAT CACTGGCGTG 
CGCGGCGTCG CCGCCAGTGA GCAAACGCTG ATCCAGGTCC AGAAAACGTT ACAAGAAGAA 
AAAATTCCCG CTAAGTCTGT GGCACTGGAA GAGGGCGCTA TTCTTGCGCG CTTCGACACC 
ACCGATACCC AGCTACGCGC CCGTGAAGCG CTGATGAGCG TGCTGGGGGA TAAATATGTC 
GTGGCGCTTA ACCTTGCGCC GGCTACGCCG CGCTGGTTGG CGGCTATTCA CGCCGATCCG 
ATGAAGCTCG GTCTTGATCT GCGCGGCGGC GTTCACTTCC TGATGGAAGT GGATATGGAT 
ACCGCGTTAG GTAAACTCCA GGAACAAAAT ATCGATAGCC TGCGCAGCGA TCTGCGTGAA 
AAAGGCATTC CTTATACCAC CGTTCGTAAA GAAAATAATT ATGGGTTGAG CATCACGTTC 
CGTGACAGCA AAGCGCGTGA TGAGGCGATC GCCTATCTGA CGCCGCGTCA TCGTGACCTG 
GTGATTTCCA GCCAGGGCGG TAATCAACTT CGCGCGGTAA TGACCGATGC GCGCCTGAGC 
GAAGCGCGCG AATACGCCGT TCAGCAGAAC ATTAATATTC TGCGTAACCG TGTTAACCAA 
CTGGGCGTCG CGGAGCCTGT CGTACAACGC CAGGGCGCAG ACCGTATTGT GGTTGAGCTG 
CCGGGTATCC AGGATACCGC TCGCGCGAAA GAAATTCTCG GCGCGACCGC GACGCTGGAA 
TTCCGTCTGG TGAATACCAA CGTTGACCAG GCCGCCGCTG CTGCCGGGCG CGTACCGGGT 
GATTCCGAAG TGAAACAGAC CCGCGAAGGT CAGCCGGTGG TATTGTACAA ACGCGTGATC 
CTCACCGGCG ACCATATCAC CGACTCGACG TCCAGCCAGG ATGAATATAA CCAACCGCAG 
GTTAACATCT CGCTGGATAG CGCAGGCGGC AATATCATGT CTAACTTCAC TAAGGACAAT 
ATCGGCAAAC CGATGGCGAC CCTGTTTGTG GAGTATAAAG ACAGCGGTAA GAAAGACGCT 
AACGGTCGCG CCGTACTGGT GAAACAGGAA GAAGTGATTA ACATTGCCAA CATCCAGTCC 
CGGCTGGGTA ACAGCTTCCG TATTACTGGT ATCAGCAACC CGAACGAAGC GCGTCAGCTC 
TCGTTGTTGT TGCGTGCGGG CGCCCTGATT GCGCCGATTC AGATCGTTGA AGAGCGCACC 
ATTGGCCCGA CTCTGGGTAT GCAGAACATC AAGCAGGGCC TGGAAGCCTG TCTGGCCGGT 
CTGGTGGTCT CCATCCTGTT CATGATCTTC TTCTATAAGA AGTTTGGTCT GATTGCGACC 
AGCGCGTTAG TGGCTAACCT GGTGTTGATT GTCGGTATCA TGTCGCTGTT GCCGGGGGCA 
ACGCTCAGTA TGCCGGGGAT TGCGGGTATC GTGTTAACCC TTGCGGTGGC GGTCGACGCC 
AACGTTCTGA TTAACGAACG TATCAAAGAA GAGTTGAGTA ATGGCCGCAC GGTACAGCAG 
GCGATAAACG AAGGCTATGC CGGCGCGTTC AGTTCCATCT TCGATGCGAA CATCACGACG 
CTGATTAAAG TCATCATTCT GTATGCCGTT GGTACCGGGG CAATTAAAGG GTTCGCGATT 
ACGACCGGTA TCGGTGTGGC GACGTCGATG TTTACCGCGA TTATCGGTAC GCGTGCTATC 
GTAAACCTGC TATATGGCGG CAAGCGCGTC ACTAAGCTGT CAATCTGA 

 

Protein sequence

MLNRYPLWKY IMLVVVIIVG LLYALPNLYG EDPAVQITGV RGVAASEQTL IQVQKTLQEE 
KIPAKSVALE EGAILARFDT TDTQLRAREA LMSVLGDKYV VALNLAPATP RWLAAIHADP 
MKLGLDLRGG VHFLMEVDMD TALGKLQEQN IDSLRSDLRE KGIPYTTVRK ENNYGLSITF 
RDSKARDEAI AYLTPRHRDL VISSQGGNQL RAVMTDARLS EAREYAVQQN INILRNRVNQ 
LGVAEPVVQR QGADRIVVEL PGIQDTARAK EILGATATLE FRLVNTNVDQ AAAAAGRVPG 
DSEVKQTREG QPVVLYKRVI LTGDHITDST SSQDEYNQPQ VNISLDSAGG NIMSNFTKDN 
IGKPMATLFV EYKDSGKKDA NGRAVLVKQE EVINIANIQS RLGNSFRITG ISNPNEARQL 
SLLLRAGALI APIQIVEERT IGPTLGMQNI KQGLEACLAG LVVSILFMIF FYKKFGLIAT 
SALVANLVLI VGIMSLLPGA TLSMPGIAGI VLTLAVAVDA NVLINERIKE ELSNGRTVQQ 
AINEGYAGAF SSIFDANITT LIKVIILYAV GTGAIKGFAI TTGIGVATSM FTAIIGTRAI 
VNLLYGGKRV TKLSI