| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0390 |
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| Symbol | |
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| ID | 6484440 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 398353 |
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| End bp | 401520 |
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| Gene Length | 3168 bp |
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| Protein Length | 1055 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642735814 |
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| Product | hypothetical protein |
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| Protein accession | YP_002039588 |
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| Protein GI | 194446408 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0000000297308 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATTCA CCCACTTTTT CATCGCACGG CCCATCTTCG CCATCGTCCT GTCGCTGTTA
ATGCTGCTGG CTGGCGCTAT CGCCTTTTTA AAACTGCCGC TGAGTGAATA TCCGGCCGTT
ACGCCGCCCA CGGTACAGGT TAGCGCCAGC TACCCCGGCG CTAACCCGCA AGTGATTGCC
GATACGGTAG CCGCGCCGCT GGAACAGGTG ATCAACGGCG TTGACGGCAT GTTGTATATG
AATACCCAGA TGGCCATTGA TGGTCGCATG GTTATCTCTA TCGCCTTCGA ACAGGGAACC
GATCCTGATA TGGCGCAAAT TCAGGTGCAA AACCGGGTAT CCCGCGCGCT GCCTCGCCTG
CCCGAAGAAG TCCAGCGAAT TGGCGTTGTA ACGGAGAAAA CGTCCCCCGA TATGTTGATG
GTGGTCCATC TTGTCTCGCC GCAAAAACGC TATGACTCGC TTTACCTGTC TAACTTCGCC
ATTCGGCAGG TTCGCGACGA ACTGGCCCGT TTACCCGGCG TCGGCGATGT TCTCGTCTGG
GGCGCGGGCG AGTACGCCAT GCGCGTCTGG CTGGACCCGG CGAAAATCGC CAACCGCGGT
CTTACCGCCA GTGATATCGT TACGGCGTTG CGGGAACAAA ACGTACAGGT CGCCGCCGGT
TCCGTCGGGC AACAGCCGGA GGCCTCCGCC GCTTTTCAGA TGACGGTAAA CACGCTGGGC
CGCCTGACCA GCGAAGAACA GTTCGGCGAG ATTGTGGTAA AAATCGGCGC TGACGGCGAG
GTGACGCGTC TGCGTGATAT CGCCCGCGTC ACGCTGGGCG CAGATGCCTA TACGCTGCGC
AGTTTACTGA ATGGCGAAGC GGCGCCAGCG TTACAGATTA TTCAAAGTCC GGGCGCCAAT
GCGATTGACG TTTCTAACGC GATTCGCGGC AAAATGGATG AGTTGCAGCA AAACTTCCCG
CAGGATATCG AATACCGGAT TGCCTATGAT CCTACGGTCT TCGTGCGCGC ATCGCTACAA
TCGGTGGCGA TTACGTTGCT GGAAGCCCTC GTGCTGGTCG TCCTTGTCGT GGTGCTGTTC
CTGCAAACCT GGCGGGCGTC CATTATTCCT CTGGTGGCGG TTCCCGTTTC GCTGGTCGGC
ACCTTTGCCT TGATGCACCT GTTTGGCTTT TCGCTGAATA CGCTTTCGCT GTTTGGTTTG
GTCCTGTCGA TAGGTATCGT TGTTGATGAC GCCATCGTTG TGGTCGAAAA CGTGGAACGG
CATATCTCGC AGGGCAAAAG CCCCGGAGAG GCGGCAAAGA AGGCGATGGA TGAAGTCACT
GGTCCCATTC TTTCTATTAC CTCGGTGCTA ACGGCGGTCT TTATCCCTTC CGCATTCCTG
GCGGGCCTGC AGGGTGAGTT TTATCGTCAG TTCGCGTTGA CCATCGCTAT TTCGACCATC
CTTTCGGCCA TTAACTCGCT GACGCTCTCC CCTGCGCTGG CTGCCATTTT GCTAAGACCG
CACCACGATA CTGCGAAGGC TGACTGGCTA ACGCGGTTGA TGGGCACGGT CACTGGCGGT
TTTTTCCATC GCTTTAACCG TTTCTTCGAC AGCGCGTCGA ACCGCTATGT TAGCGCCGTC
CGTCGGGCCG TGCGCGGCAG CGTCATTGTG ATGGTGCTCT ATGCTGGCTT TGTGGGGCTG
ACCTGGCTTG GCTTCCATCA GGTGCCGAAC GGGTTTGTGC CTGCGCAGGA TAAATACTAT
CTCGTCGGCA TCGCCCAGCT CCCAAGCGGC GCATCGTTGG ATCGCACAGA GGCGGTCGTG
AAACAGATGT CCGCTATCGC GCTGGCGGAA CCCGGCGTTG AAAGCGTCGT CGTCTTCCCC
GGTCTGTCGG TTAACGGCCC GGTAAATGTG CCAAATTCGG CGCTGATGTT CGCCATGCTG
AAACCCTTTG ACGAGCGTGA AGATCCTTCG CTTTCCGCTA ACGCTATCGC CGGAAAGCTA
ATGCACAAAT TTAGCCACAT TCCCGACGGA TTTATTGGCA TCTTCCCGCC ACCGCCGGTT
CCAGGGCTTG GCGCGACGGG CGGCTTTAAA TTGCAGATTG AAGATCGTGC GGAACTGGGA
TTTGAAGCGA TGACAAAGGT GCAAAGCGAG ATTATGTCTA AGGCGATGCA GACGCCCGAA
CTGGCCAATA TGCTGGCCAG TTTCCAGACA AACGCCCCGC AATTACAGGT GGATATCGAC
CGGGTGAAGG CGAAATCAAT GGGGGTATCG CTCACCGACA TCTTTGAAAC GTTGCAAATT
AACCTCGGCT CGCTTTACGT CAACGATTTC AACCGATTTG GCCGTACCTG GCGGGTGATG
GCGCAGGCCG ATGCGCCATT CCGTATGCAG CAAGAGGATA TCGGCCTGCT TAAAGTCCGC
AATGCGAAGG GCGAGATGAT CCCGCTTAGC GCTTTCGTCA CGATTATGCG CCAGTCGGGG
CCGGACAGAA TCATCCATTA CAACGGCTTC CCCTCGGTAG ATATTAGCGG TGGACCGGCT
CCGGGCTTCT CCTCCGGACA GGCGACGGAC GCGATTGAAA AGATCGTGCG TGAAACGTTA
CCGGAAGGGA TGGTCTTCGA ATGGACCGAT CTGGTTTATC AGGAAAAACA GGCCGGCAAC
TCTGCGCTTG CTATCTTTGC GCTGGCGGTG CTGCTGGCCT TCCTGATCCT GGCGGCGCAG
TACAACAGTT GGTCGCTGCC CTTCGCCGTC CTGCTTATTG CGCCTATGTC ATTACTCTCA
GCCATTGTCG GCGTGTGGGT ATCTGGCGGA GATAACAATA TCTTTACGCA GATTGGTTTC
GTGGTGCTGG TCGGCCTGGC GGCCAAGAAC GCCATTTTGA TTGTCGAGTT TGCCCGCGCC
AAAGAACACG ACGGCGCAGA CCCGCTGACC GCCGTACTGG AAGCGTCACG CCTGCGTCTA
CGTCCTATCC TGATGACCTC ATTCGCCTTT ATCGCAGGCG TAGTACCACT GGTACTCGCG
ACGGGTGCCG GCGCGGAAAT GCGACATGCG ATGGGCATCG CCGTGTTTGC CGGCATGTTG
GGCGTCACGC TCTTCGGCCT GTTATTGACG CCTGTATTTT ACGTGGTGGT TCGCAGGATG
GCATTAAAGC GTGAGAACCG CGTTGATTCG CATGATCAGC AAGCATAA
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| Protein sequence | MKFTHFFIAR PIFAIVLSLL MLLAGAIAFL KLPLSEYPAV TPPTVQVSAS YPGANPQVIA
DTVAAPLEQV INGVDGMLYM NTQMAIDGRM VISIAFEQGT DPDMAQIQVQ NRVSRALPRL
PEEVQRIGVV TEKTSPDMLM VVHLVSPQKR YDSLYLSNFA IRQVRDELAR LPGVGDVLVW
GAGEYAMRVW LDPAKIANRG LTASDIVTAL REQNVQVAAG SVGQQPEASA AFQMTVNTLG
RLTSEEQFGE IVVKIGADGE VTRLRDIARV TLGADAYTLR SLLNGEAAPA LQIIQSPGAN
AIDVSNAIRG KMDELQQNFP QDIEYRIAYD PTVFVRASLQ SVAITLLEAL VLVVLVVVLF
LQTWRASIIP LVAVPVSLVG TFALMHLFGF SLNTLSLFGL VLSIGIVVDD AIVVVENVER
HISQGKSPGE AAKKAMDEVT GPILSITSVL TAVFIPSAFL AGLQGEFYRQ FALTIAISTI
LSAINSLTLS PALAAILLRP HHDTAKADWL TRLMGTVTGG FFHRFNRFFD SASNRYVSAV
RRAVRGSVIV MVLYAGFVGL TWLGFHQVPN GFVPAQDKYY LVGIAQLPSG ASLDRTEAVV
KQMSAIALAE PGVESVVVFP GLSVNGPVNV PNSALMFAML KPFDEREDPS LSANAIAGKL
MHKFSHIPDG FIGIFPPPPV PGLGATGGFK LQIEDRAELG FEAMTKVQSE IMSKAMQTPE
LANMLASFQT NAPQLQVDID RVKAKSMGVS LTDIFETLQI NLGSLYVNDF NRFGRTWRVM
AQADAPFRMQ QEDIGLLKVR NAKGEMIPLS AFVTIMRQSG PDRIIHYNGF PSVDISGGPA
PGFSSGQATD AIEKIVRETL PEGMVFEWTD LVYQEKQAGN SALAIFALAV LLAFLILAAQ
YNSWSLPFAV LLIAPMSLLS AIVGVWVSGG DNNIFTQIGF VVLVGLAAKN AILIVEFARA
KEHDGADPLT AVLEASRLRL RPILMTSFAF IAGVVPLVLA TGAGAEMRHA MGIAVFAGML
GVTLFGLLLT PVFYVVVRRM ALKRENRVDS HDQQA
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