Gene SNSL254_A0384 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A0384 
Symbol 
ID6485352 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand+ 
Start bp393244 
End bp393987 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content40% 
IMG OID642735808 
Productputative response regulator 
Protein accessionYP_002039582 
Protein GI194444237 
COG category[K] Transcription 
COG ID[COG3710] DNA-binding winged-HTH domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.00164652 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value0.00364689 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTCAGA ACAATTATCT GATTGACAAA AGAGTTATTC TTGATTGTGA ACGAATGACG 
CTTTCCTGCG CCGGAGAGTC GATAACGATA TCTGAATCGG AACGCAGTTT GCTTATCGCT 
TTTTATGAAG GCCTTTTTAA AAAAGATGAT TTAATTAACT ATGTCTGGGG GCGCAAAGGT 
GTCGTGGTCT CTGATGCCAG TTATTATAAA CTGATTAACC AGCTACGAGG ATCATTTGAT 
AAAATTGGTC TTAAGGGGGC ATCTGTTGTG ACTCGCCCTC GCGTGGGTGT TTTACTCTCA 
GTTTCCATTG AACCGTTGAG TGATGAGGCG CAAAATACGC CGTTGCCTGC TGTTGCTGAA 
ACAGAATTAT CGACGGTTGA AGTGCGACGC GATGACACTA TTATCCCTCC AATACCGGGC 
GCTGTGAATA AAAAAGATTG GCTCTACTTT TGCCTGGCCG CGCTTCTGAT GTTTTTTATG 
ATGTATAAAG TTAAGGGTGA AAATATTGAT TACTTTACCC TCCAGGGTTC GTATGATGGA 
TACACTTTTT ATAGTGTCGG GCATGATAAA ACCCATCTGA CGGATATCGT TGAAGCGTAC 
TCTGAGATGA GTAATGAAAT ACATAAACAA AACGGAAAAA TCATTTATTA CATTCGCGTT 
CCTAATACAA ATATTTTTGT CCAGTGTCTT AACCAACTTG ATATAGCGGA GCCGAAATGC 
ATTTCCATAA AAGAACGTTA TTAA
 
Protein sequence
MSQNNYLIDK RVILDCERMT LSCAGESITI SESERSLLIA FYEGLFKKDD LINYVWGRKG 
VVVSDASYYK LINQLRGSFD KIGLKGASVV TRPRVGVLLS VSIEPLSDEA QNTPLPAVAE 
TELSTVEVRR DDTIIPPIPG AVNKKDWLYF CLAALLMFFM MYKVKGENID YFTLQGSYDG 
YTFYSVGHDK THLTDIVEAY SEMSNEIHKQ NGKIIYYIRV PNTNIFVQCL NQLDIAEPKC 
ISIKERY