| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0319 |
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| Symbol | |
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| ID | 6482664 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 333121 |
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| End bp | 335310 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642735751 |
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| Product | Rhs family protein |
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| Protein accession | YP_002039526 |
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| Protein GI | 194442493 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.946115 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 0.027027 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTTG TATCCACAAA TAATAAATCC GGTATAGGAG GGCTGACGAC AACCACGCCG
CCGATAACCG GAGAAAGTGG CGGTGTCACC GCAGATTCAG TCGCCGGAAG CGTGGCAGAT
GCGGCGGAAG CCGCCGTGGA ACAGGCTGCG GGATCGCTGT TTGGCGCATT GCCGGAGCCA
TCAGGACTGG TGAAAGCCGC GGTGGCAGCG GCGCAGGCTG CCGCCGCCGC AGGTATGGCG
CAGGATGCGG TATCGGCCAT CGTCTCTGCT GTTGCAGGCG GGCCGGGGGC GCATAATGTG
ACGGTCAGCG GCAGCGCCGT ACCGCCGGGC GCATTACTGT TCGCCAGCCT GGACGGCGGC
GAAACATTAA GTGAACTGTT CAGCTATGTG GTACAGCTAA AAACGCCCGA CACCCTGAAT
CTGGGCTATG TCTCCCCGGC GGCCAACCTG CCGCTCAAAC CGATGGTGGG CAAAGATCTG
TGCGTCAACA TCGAACTGGA TGGTGGCGGT AAACGACATA TCAGCGGGCT GGTCACGGCG
GCGCGGGTGG TGGGCCATGA AGGGCGTTCG GTTACCTATG AGCTGCGTAT GGAGCCGTGG
GTAAAACTGC TGACCCATAC CAGCGACTAC AAAGCATTCC AGAATAAAAC CGTGGTGGAT
ATTCTGGATG AAGTGCTGGC GGAATACCCC TACCCGGTGG AAAAGCGGCT GGTGGAAAGC
TACCCGGTAC GTACCTGGCA GGTGCAGTAC GGTGAAACTG ATTTTGATTT TCTTCAGCGA
CTGATGCAGG AGTGGGGCAT CTACTGGTGG TTTGAGCACA GCGAGGACAG CCACACGCTG
GTGCTGGCGG ATGCCATCAG CGCCCACAAA GCATGTCCGG ACTCGCCGCT GGTCGAGTGG
CACCAGGAAG GGCTGAAGCT GGACAAGGAG TTTATCCACA CTATCACGGC AAACGAGAGT
CTGCGGACTG GCCAGTGGGT GCTGGATGAT TTCGATTTTA CGAAGCCACG TTCATTGCTG
GCAAACACCG TGGCAAACCC GCGTGAAACC GGTCATGCCA CCTACGAGCA TTATGAGTGG
CCGGGAGACT ACTTCGACAA GAGTGAAGGC GAGATGCTGA CGCGCATTCG TATGGAAGCG
CAGCGCAGCC CCGGCAGTCG GGTGCTGGGG GGAGGGAATA TCCGCACACT CATGACCGGT
TATACCTTCA CGCTGGAAAA CTATCCCACT GCCGAAGTCA ATCAGGAATA CCTGCTGATG
CAGACCTTGC TGTTTGTGCA GGACAACGCG CAGCACAGCG GGCAGGACCA GCACTTTACC
TTTTCCACCC GTTTTGAACT GCACCCCACC CGTGAGGTGT TCCGCCCGCA GCGGACGGTG
AGCAAACCCC ACACCAAAGG GCCGCAGAGC GCCATCGTCA CCGGCCCGGC GGGCCAGGAA
ATCTGGACGG ATCAGTACGG GCGGGTAAAG GTACAGTTTG GCTGGGATCG CTACGGCAAA
ATGGATGAAA ACAGCTCCTG CTGGATACGC GTCAGCTACC CGTGGGCGGG CAAAGGCTTC
GGGATGATCC AGATCCCGCG TATCGGCCAG GAAGTGCTGG TGGATTTCAA AAACGGCGAT
CCGGATCTGC CGATCATCGT GGGGCGTACC TACAACCAGG ACACCATGCC ACCGTGGGGA
CTGCCGGGAA TGGCGTCGCA GAGCGGGATC TTCAGCCACT CGCTGTATGG CGGGCCAACG
AACGGCAACA TGCTGCGTTT TGACGACAAA ACCGGCGCGG AGGAAGTGAA GTTCCACGCG
GAAAAAGATC TCAACACCAC GGTGAAGAAT AATGAAACGC ATACGGTTAT GGTGGATCGC
ACTAAAACCA TTATTAAAAA TGAAACCAAC AGTATTGGTG AGGACAGAAA CACCACGGTA
ACGAAGAATG ACGGCCTTTC CGTAAAACTG GCGCAGACGA TCAATATCGG CACCACTTAT
CGTTTAGATG TTGGCGATCA ATTCACGCTT CGCTGCGGCA ATGCGGCGCT TGTTTTACAT
AAGGACGGCT CCATTGAGTT TTGTGGCAAG CAACTGATGT TACATACCAG CGATGTCATG
CAACTGATTG GTAAAGGTAT TGATATGAAC CCGGATGGCG GCACAGCCGT AACCGCCGAT
GATATTGCCC CCCTTCCCAC CTCTGAGTGA
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| Protein sequence | MSFVSTNNKS GIGGLTTTTP PITGESGGVT ADSVAGSVAD AAEAAVEQAA GSLFGALPEP
SGLVKAAVAA AQAAAAAGMA QDAVSAIVSA VAGGPGAHNV TVSGSAVPPG ALLFASLDGG
ETLSELFSYV VQLKTPDTLN LGYVSPAANL PLKPMVGKDL CVNIELDGGG KRHISGLVTA
ARVVGHEGRS VTYELRMEPW VKLLTHTSDY KAFQNKTVVD ILDEVLAEYP YPVEKRLVES
YPVRTWQVQY GETDFDFLQR LMQEWGIYWW FEHSEDSHTL VLADAISAHK ACPDSPLVEW
HQEGLKLDKE FIHTITANES LRTGQWVLDD FDFTKPRSLL ANTVANPRET GHATYEHYEW
PGDYFDKSEG EMLTRIRMEA QRSPGSRVLG GGNIRTLMTG YTFTLENYPT AEVNQEYLLM
QTLLFVQDNA QHSGQDQHFT FSTRFELHPT REVFRPQRTV SKPHTKGPQS AIVTGPAGQE
IWTDQYGRVK VQFGWDRYGK MDENSSCWIR VSYPWAGKGF GMIQIPRIGQ EVLVDFKNGD
PDLPIIVGRT YNQDTMPPWG LPGMASQSGI FSHSLYGGPT NGNMLRFDDK TGAEEVKFHA
EKDLNTTVKN NETHTVMVDR TKTIIKNETN SIGEDRNTTV TKNDGLSVKL AQTINIGTTY
RLDVGDQFTL RCGNAALVLH KDGSIEFCGK QLMLHTSDVM QLIGKGIDMN PDGGTAVTAD
DIAPLPTSE
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