| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0298 |
|---|
| Symbol | clpV |
|---|
| ID | 6486143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 313174 |
|---|
| End bp | 315813 |
|---|
| Gene Length | 2640 bp |
|---|
| Protein Length | 879 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642735731 |
|---|
| Product | ClpV1 family type VI secretion ATPase |
|---|
| Protein accession | YP_002039506 |
|---|
| Protein GI | 194445862 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR03345] type VI secretion ATPase, ClpV1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 0.140659 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACTC CTGTTTCACG CAGTGCGTTG TATGGAAAAC TGGCCGGCCC ACTATTCCGG
TCGCTGGAAT CGGCAACGGC ATTTTGCAAA CTACGATCTA ATCCCTGGGT TGAGCTGACT
CACTGGCTGC ACCAGTTAAC ACAGCAGCCC GATAACGATA TTCTCCACGT TCTTCGGCAT
TACCAGCTCC CTCTTTCTGA TGTGGAGAAA GCGTTACTCC GGCAACTGGA TATGCTGCCC
GCCGGGGCCA GCGCCATTAG TGATTTTTCT CACCATATCG ATCTCAGCGT TGAAAAGGCC
TGGATGCTGG CGAGCGTCCG TTACGGCGAT AACAAAATTC GCAGCGGCTG GTTGCTGCTG
GCCTTGTTGA CCACGCCAGA ACTGCGTCGG GTACTGAGCA GTATCTGCGC GCCGCTGGCC
ACGCTTCCGG TTGATGAACT GACGGAAATA CTGCCCTCGT TGATCGAAAC ATCGCCGGAA
GCGCAGGAGC GCCCTTACGA CGGCTCCGGC CTGGCATCAG CCATTCCCGG TGAAAGCAAT
CAGGCGATTC CCAACGGCGG GCAGGACGGT AAATCCGCGC TGGCGAAATA CTGTCAGGAC
ATGACGGCAC AGGCGCGCGA CGGCAAAATC GACCCGGTGA CGGGGCGTGA GCATGAAATC
CGCACCATGA CGGATATTCT GCTGCGCCGT CGCCAGAATA ATCCACTACT GACTGGTGAG
GCGGGCGTCG GAAAGACGGC GGTCGTCGAA GGTTTTGCCC TCGCGATTGC GCAGGGGGAA
GTGCCGCCCG CGCTGCGGGA AGTACGGCTG CTGGCGCTGG ACGTTGGCGC TCTGTTGGCC
GGAGCCAGCA TGAAAGGCGA GTTTGAATCG CGTCTGAAAG GGTTACTGGA AGAGGCCGGG
CGCTCGCCGC AGCCGGTTAT TCTGTTTGTC GATGAAGTTC ACACTCTGGT GGGCGCGGGC
GGCGCATCCG GCACGGGCGA TGCCGCTAAC CTGCTGAAAC CGGCGCTGGC GCGCGGCACC
CTGCGGACTA TCGGCGCCAC CACCTGGAGC GAATACAAGC GCCATATTGA GAAAGATCCG
GCGCTGACCC GGCGTTTTCA GGTGTTGCAG ATTGCCGAAC CGGAAGAGAT CCCCGCAATG
GAAATGGTAC GTGGTTTGGT GGATACGCTG GAAAAACACC ATAACGTACT GATTCTGGAT
GAGGCGGTAC GTGCGGCGGT ACAGCTTTCT CACCGCTACA TTCCCGCCCG GCAGTTGCCG
GATAAGGCCA TCAGCCTGCT GGATACCGCC GCGGCCCGCG TGGCGCTGAC GCTGCACACG
CCGCCTGCCA GCGTACAGTT CCTGCGCCAG CAGCTAAAAG CGGCGGAAAT GGAACGGTCG
CTGTTGCAGA AGCAGGAAAA AATGGGGATT CAGTCAGATG AGCGGCGCGA TGCGCTGACG
GCGCGAATTT TCTCGCTCAA CAATGAACTG ACTGCATCCG AATCCCGCTG GCAGCGGGAG
CTGGAACTGG TACATACGTT GCAGGAACTG CGTGTCGCAG AGTCTGATGC TGATGACAAA
ACCACGCTGC AACAGGCCGA AACGGCGCTA AGGGAGTGGC AGGGCGACGC GCCGGTGGTG
TTCCCGGAAG TCAGCGCGGC GGTGGTCGCG GCGATTGTCG CCGACTGGAC CGGTATTCCT
GCCGGGCGCA TGGTGAAAGA TGAGGCCAGC CAGGTGCTGG AACTGCCTGC CCGACTGGCG
CAACGCGTTA CCGGGCAAGA CGGCGCGCTG GCGCAGATTG GTGAACGTAT TCAGACCGCC
AGGGCGGGAC TGGGCGATCC ACGCAAACCG GTGGGCGTGT TTATGCTGGC CGGGCCGTCT
GGTGTCGGTA AAACCGAAAC CGCACTGGCG CTGGCGGAGG CTATCTACGG CGGTGAGCAG
AACCTGATTA CCATCAATAT GAGCGAGTTC CAGGAGGCTC ACACCGTTTC CACGCTGAAA
GGCGCGCCCC CCGGCTATGT GGGCTATGGC GAGGGTGGTG TGCTGACGGA AGCGGTGCGT
CGCCACCCCT GGAGCGTAGT GCTGCTCGAC GAGATCGAAA AAGCGCACCA TGACGTCCAT
GAACTCTTCT ATCAGGTGTT TGACAAGGGC GGGATGGAGG ACGGTGAGGG AACACATGTC
GATTTCAAAA ACACCACGCT ATTACTCACC ACCAACGTGG GTTCCGACCT CATCAGCCAG
ATGTGTGAAG ATCCGGCTTT AATGCCCGAT GCTACGGGGC TTAAAGAGGC GCTAATGCCG
GAATTACGCA AGCATTTCCC GGCGGCATTT CTGGGCCGCG TGACGGTGAT CCCTTACCTG
CCGCTGGACG AAACGTCGCG TGGCGTGATT GCCCGTCTGC ACCTTGACCG GCTGGTGGCG
CGGATGGGTG AACAGCACGG CGTGACGCTG ACGTATAGCG AGGAACTGGT CGCACATATT
GTGGCGTGCT GTCCAATGCA TGAAACGGGC GCGCGGTTGC TGATTGGCTA CATCGAACAG
CACATCCTGC CACAACTGTC GCGCTACTGG TTGCAGGCCA TGACGGAAAA AGCCGCGATC
AGGCAGATTG ATATCGGCGT TAATGGTGAT GAGCAGATTG TTTTTGAGAT CGTTTGCTGA
|
|---|
| Protein sequence | METPVSRSAL YGKLAGPLFR SLESATAFCK LRSNPWVELT HWLHQLTQQP DNDILHVLRH
YQLPLSDVEK ALLRQLDMLP AGASAISDFS HHIDLSVEKA WMLASVRYGD NKIRSGWLLL
ALLTTPELRR VLSSICAPLA TLPVDELTEI LPSLIETSPE AQERPYDGSG LASAIPGESN
QAIPNGGQDG KSALAKYCQD MTAQARDGKI DPVTGREHEI RTMTDILLRR RQNNPLLTGE
AGVGKTAVVE GFALAIAQGE VPPALREVRL LALDVGALLA GASMKGEFES RLKGLLEEAG
RSPQPVILFV DEVHTLVGAG GASGTGDAAN LLKPALARGT LRTIGATTWS EYKRHIEKDP
ALTRRFQVLQ IAEPEEIPAM EMVRGLVDTL EKHHNVLILD EAVRAAVQLS HRYIPARQLP
DKAISLLDTA AARVALTLHT PPASVQFLRQ QLKAAEMERS LLQKQEKMGI QSDERRDALT
ARIFSLNNEL TASESRWQRE LELVHTLQEL RVAESDADDK TTLQQAETAL REWQGDAPVV
FPEVSAAVVA AIVADWTGIP AGRMVKDEAS QVLELPARLA QRVTGQDGAL AQIGERIQTA
RAGLGDPRKP VGVFMLAGPS GVGKTETALA LAEAIYGGEQ NLITINMSEF QEAHTVSTLK
GAPPGYVGYG EGGVLTEAVR RHPWSVVLLD EIEKAHHDVH ELFYQVFDKG GMEDGEGTHV
DFKNTTLLLT TNVGSDLISQ MCEDPALMPD ATGLKEALMP ELRKHFPAAF LGRVTVIPYL
PLDETSRGVI ARLHLDRLVA RMGEQHGVTL TYSEELVAHI VACCPMHETG ARLLIGYIEQ
HILPQLSRYW LQAMTEKAAI RQIDIGVNGD EQIVFEIVC
|
|---|
| |