| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0293 |
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| Symbol | vasA |
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| ID | 6484210 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 308703 |
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| End bp | 310586 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642735726 |
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| Product | type VI secretion protein |
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| Protein accession | YP_002039501 |
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| Protein GI | 194443419 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 63 |
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| Fosmid unclonability p-value | 0.632064 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCCAC GGCTACTGGA GTATTACAAC CGCGAACTGA GCTACCTGCG GGAGACCGGT
GCTGAGTTCG CCACCCTCCA TCCCAAAATT GCCGCCCGAC TGGGGATGCA GGGAACCGAT
ATTGCCGACC CGTATGTGGA ACGCATGATC GAGGCGTTCA GCTTTCTGAG CGCCCGCACT
CAGCTAAAAA TTGACGCCGA ATTTCCCCGC TTCACACAGC GGTTACTGGA AGTCGTCAGC
CCCAATTACG TCACCCCCAC GCCATCGATG GCAGTGGTAA AGCTGTATCC CGATACGCAG
GAAGGCGACC TGGCGAAAGG GGTCACCGTG CCGCGCGATA CCGCGTTCGT TTCCCCCATC
CCGGAAGGCG AAAATACCGC CTGCCAGTTT CGCAGCAGCC AGGACGTCAC GCTGTGGCCG
CTGTCCATCG AGGAGGTACG CCTGACCGCC GCGCCGCCGG ATATGCCCGC CCTGCACCGC
TATCTGCCGC CTAATATTCA TGTCGCCGGG GCATTGCGCA TCACCCTGCG AACCTTCGGG
GAACTGACTT TCAGCGAGCT GGCCGGTCCG GCACGGCTGC CCTTTTACCT CTGCGGCGAA
GAACGCATTG CATCACACCT GTTTGAGCTG CTGCATACCA GCGCCGTCGC CACACTGGCC
GGTGAACCCG GTCACTTTGA CGGCGAACTG AATGTGAATC TTCAACACCC GGTGGCGCAC
GAAGGGCTGG AGCCAGGGCA GGGGCTGCTA CCGCTCGCCT GGAACGTGTT TCACGGCCAT
AATCTGCTGC ATGAATTTTT CGCCTGTCCG GAACGGTTTT ACTTCTTCAC CCCGACCGGA
TTGTCTGCCG GGTTACAAAA GGTGCAGGGC AATGTGGCGG AAATTGTCAT ACTGCTTAAC
CGCCTGCCGC CGGACTGGCT GATTCATCAG ACGGACGCTG CACAGTTCAG CCTGTTCTGT
ACGCCGGTGA TCAACCTGTT TCCCCGCACC ACCACCCGGA TTGAAGTTAC TCACAGCGTG
ACGGAACAGC ATCTGGTGGT GGATCGTACC CGTCCGCTGG ATTACGAGGT GTTTTCTGTT
CAGGAAGTCG AAGGCCTGGA AGCGGAAACC ACACGGAAGA TGATTTTTCG TCCGCTGTAT
CACACCCGTA ATAATGACGA AGGCAACCAC GGGCGTTATT TTTCACTGCG TCGTGAGCCG
CGCCGCTCGT CAGAAAACGC CCGCCGCTAT GGCACCCGAA CCCCCTATAC CTGCTCGGAA
GTCTTCCTGT CGCTGGTTGA TCAGCATGAA GCGCCCTACC CGGAAAATCT GCGCCATATC
ACCGTCACGG CAATGGTGAC TAACCGCGAT CTGCCCTGCC TTATTCCACG TAATGGCCGG
GATGATCTGA CCGTAGATGC GGCGATTCCG GTGGCGGGCG TGGGTCTTAT CAGACCGCCG
CGCCCGCCGC AGCCGCCGCT GGCTGAACGC GAAATGGCCT GGCGGCTGAT CCGGCAGTTG
TCGTTTAATT ATCTGCCGCT GGCCGATCTG GATCACCGCA CCGGCGGCCA GGCGCTGCGC
GATCTGCTGA ATCTGTTTAT CCCGGCTCAC GACAGCCCGC AGTCGCGCCA GGTGCGCAGC
CTGATTGGCT GCAAAACCAC CCCGGTGACC CGCCGCCTGC CCGGCTCCGG CCTGTTGGTC
TATGGCCGGG GCGTCAGTTG CGAACTGACC GTGGACGAAG AGGGATTTTC CGGTATCAGT
CCTTACCTGT TCGGTCTGGT GCTGGAACAC TATATTGCCC GCCATGTTTC CATTAATACC
TTCTCGCAGA TGACGCTGCA CTCGATGCAA CGCGGGCATG TCATGACCTG GCCGGTCAGA
ACCGGGCAAC GGGGGAGCGT ATGA
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| Protein sequence | MDPRLLEYYN RELSYLRETG AEFATLHPKI AARLGMQGTD IADPYVERMI EAFSFLSART
QLKIDAEFPR FTQRLLEVVS PNYVTPTPSM AVVKLYPDTQ EGDLAKGVTV PRDTAFVSPI
PEGENTACQF RSSQDVTLWP LSIEEVRLTA APPDMPALHR YLPPNIHVAG ALRITLRTFG
ELTFSELAGP ARLPFYLCGE ERIASHLFEL LHTSAVATLA GEPGHFDGEL NVNLQHPVAH
EGLEPGQGLL PLAWNVFHGH NLLHEFFACP ERFYFFTPTG LSAGLQKVQG NVAEIVILLN
RLPPDWLIHQ TDAAQFSLFC TPVINLFPRT TTRIEVTHSV TEQHLVVDRT RPLDYEVFSV
QEVEGLEAET TRKMIFRPLY HTRNNDEGNH GRYFSLRREP RRSSENARRY GTRTPYTCSE
VFLSLVDQHE APYPENLRHI TVTAMVTNRD LPCLIPRNGR DDLTVDAAIP VAGVGLIRPP
RPPQPPLAER EMAWRLIRQL SFNYLPLADL DHRTGGQALR DLLNLFIPAH DSPQSRQVRS
LIGCKTTPVT RRLPGSGLLV YGRGVSCELT VDEEGFSGIS PYLFGLVLEH YIARHVSINT
FSQMTLHSMQ RGHVMTWPVR TGQRGSV
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