Gene SNSL254_A0115 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A0115 
SymboltbpA 
ID6482863 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand- 
Start bp127471 
End bp128454 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content55% 
IMG OID642735557 
Productthiamine transporter substrate binding subunit 
Protein accessionYP_002039339 
Protein GI194444243 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4143] ABC-type thiamine transport system, periplasmic component 
TIGRFAM ID[TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily
[TIGR01276] thiamine ABC transporter, periplasmic binding protein 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones61 
Fosmid unclonability p-value0.390705 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTAAAAA AATATCTTCC ACTTTTACTC CTGTGCGCGG CGCCTGCTTT CGCCAAACCC 
GTTCTCACCG TCTATACCTA CGACTCGTTC GCCGCCGACT GGGGGCCAGG CCCGGCGGTG 
AAAAAAGCGT TTGAAGCCGA TTGCAACTGC GAGCTGAAAC TGGTGGCGCT GGAGGATGGC 
GTTTCACTGC TCAACCGCCT GCGGATGGAG GGGAAGAACA GCAAAGCCGA TGTGGTGTTG 
GGGCTGGACA ACAATCTGCT GGAAGCGGCC ACGCAAACTA AACTTTTTGC CAAAAGCGGC 
GTGGCGAATG AAGCGGTCAA GGTGCCCGGC GGCTGGAAAA ACGACACATT TGTGCCGTTC 
GATTACGGCT ATTTCGCCTT TGTCTACGAT AAAAGCAAGC TGAAAAATCC GCCGAAAAGC 
CTGAAAGAAC TGGTCGAGAG CGATCAAAAA TGGCGGGTGA TTTATCAGGA CCCGCGTACC 
AGTACGCCAG GGCTGGGGCT GTTACTGTGG ATGCGCAAAG TCTATGGCGA TAACGCGCCG 
CAGGCCTGGC AAAAACTGGC GGCCAAAACG GTGACGGTGA CGAAAGGCTG GAGCGAGGCC 
TACGGTTTAT TTCTGAAAGG TGAAAGCGAT TTGGTGCTCA GTTACACCAC CTCTCCGGCG 
TATCACATTA TTGAAGAGAA GAAGGACAAT TACGCCGCCG CGAACTTCAG CGAAGGCCAT 
TACTTACAGG TAGAAGTCGC GGCGCGTACC GTCGCCAGTA AGCAGCCGGA ACTGGCGGAG 
AAATTCCTCA AATTTATGGT TTCTCCGGCG TTTCAGAACG CCATACCCAC CGGCAACTGG 
ATGTACCCGG TAGCGGACGT CGCCTTACCC GCAGGGTTTG AATCATTGGC CAAACCCGCC 
ACAACGCTGG AATTCACGCC GCAACAAGTG GCAGCACAAC GCCAGGCATG GATTAGCGAA 
TGGCAACGCG CCGTCAGCCG TTAA
 
Protein sequence
MLKKYLPLLL LCAAPAFAKP VLTVYTYDSF AADWGPGPAV KKAFEADCNC ELKLVALEDG 
VSLLNRLRME GKNSKADVVL GLDNNLLEAA TQTKLFAKSG VANEAVKVPG GWKNDTFVPF 
DYGYFAFVYD KSKLKNPPKS LKELVESDQK WRVIYQDPRT STPGLGLLLW MRKVYGDNAP 
QAWQKLAAKT VTVTKGWSEA YGLFLKGESD LVLSYTTSPA YHIIEEKKDN YAAANFSEGH 
YLQVEVAART VASKQPELAE KFLKFMVSPA FQNAIPTGNW MYPVADVALP AGFESLAKPA 
TTLEFTPQQV AAQRQAWISE WQRAVSR