Gene SNSL254_A0046 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A0046 
Symbol 
ID6483665 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp50442 
End bp51857 
Gene Length1416 bp 
Protein Length471 aa 
Translation table11 
GC content49% 
IMG OID642735490 
Productxylose-proton symporter 
Protein accessionYP_002039272 
Protein GI194445592 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2211] Na+/melibiose symporter and related transporters 
TIGRFAM ID[TIGR00792] sugar (Glycoside-Pentoside-Hexuronide) transporter 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00152296 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones55 
Fosmid unclonability p-value0.141953 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTTTTTCT GGGCGTATCG TACCAATATC GGAGTTATCA TTATGAGTTC TGTCATTGAG 
GATACCCAGC CTTCCGGGTC AGCATCATTG TCTTTACTAC AGCGTATTAG CTACGGCTCT
TTGGATGTGG CGGGTAATCT GCTGTACTGC TTCGGTTCAA CGTACATTTT ATATTTCTAC
ACAGACGTTG CGGGCATTAG CCTTGCCGTA GCAGGCGTTA TCCTGCTGCT GGCGCGTATT
ATCGATGGCA TAGACGCCCC CATATGGGGG ATCATCATCG ATAAAACACG TTCACGCTAC
GGTAAATGTC GTCCCTGGTT TTTATGGTTA CCGCTGCCTT TTGCGGTATT CAGCGCGCTG
TCATTTTGGT CTCCTGATAT CAGTATGACA GGAAAAGCCA TCTATGCAGC AATATCTTAT
ATGATTGCCA GCATTCTATT TACCGGACTT AATACACCAC TCAGTGCAAT ATTACCCCTG
ATGACCTTAT CTCCCAAGGA AAGACTGGTT TTAAATTCCT GGCGAATGAC CGGTGGACAA
ATTGGGGTTT TATTAATGAA CGCGACCGCC TTGCCGTTAG TCGCTTTTTT AGGTAACGGC
GATGATCACG CTGGTTTTAT TTATACGGCA ATTACGTTTG CCATTATATC CTGTGCGCTA
ACGCTCTTTG CGTTTAAAAA CATTCGTGAA ATGGATACGG ATAAAATACA GCATGAACCT
AAGTTGCCGA TGAAAAAAAG TTTCGCGGCG ATGAAAGGTA ACTGGCCGTG GATCCTGATG
GTGCTGGCTA ATCTGATCTT CTGGATTGCC CTACAGCAGC GCAACACGAC CATTGTCTAT
TATCTGACCT ACAACCTCGA CCGTAAAGAT CTGGTACCGC TGATTAACAG CCTGGCGACG
ATTCAGATCC TGTTTATCAT CGCTATCCCC TTCTTTAGCA AATACCTGGC TAAAACCTGG
ATATGGGTAG GCGGTCTGCT GGTCGCCACG TTTGGCGGCG TCATGATGTG GCTGGCAGCG
GACAACATTA CTTTCCTCAT CGCCGCCTGG ATACTCGGCA ATATCGGCAG CGGTATCGCC
TGCTCAATGC CGTTTGCCAT GCTGGGCTTC GCCGTCGATT TCGGCGCCTG GAAGACCGGT
ATTAAGGCTA CCGGCATTCT TATCGCCTTC GGCAGTACCT TCTGCATCAA GATGGGTAGT
GGCCTCGGCA CCGCTTTCGC CGCCTGGATC ATGAACAGTT TTGGCTATGT CCCCAACCAT
GCCCAGAGTG CTGCGGGTCT GGAGGGCATT ATCTGGGCCT TTATCTGGGC ACCCGCCCTA
CTCTTCGCGC TCGCAGCGAT CCCACTACTT TTCTTTCGCA AATACGAAGC GATGGAAGAG
AAGATTCGCC ACGATCTGGA AACCGTCAAC TCATAA
 
Protein sequence
MFFWAYRTNI GVIIMSSVIE DTQPSGSASL SLLQRISYGS LDVAGNLLYC FGSTYILYFY 
TDVAGISLAV AGVILLLARI IDGIDAPIWG IIIDKTRSRY GKCRPWFLWL PLPFAVFSAL
SFWSPDISMT GKAIYAAISY MIASILFTGL NTPLSAILPL MTLSPKERLV LNSWRMTGGQ
IGVLLMNATA LPLVAFLGNG DDHAGFIYTA ITFAIISCAL TLFAFKNIRE MDTDKIQHEP
KLPMKKSFAA MKGNWPWILM VLANLIFWIA LQQRNTTIVY YLTYNLDRKD LVPLINSLAT
IQILFIIAIP FFSKYLAKTW IWVGGLLVAT FGGVMMWLAA DNITFLIAAW ILGNIGSGIA
CSMPFAMLGF AVDFGAWKTG IKATGILIAF GSTFCIKMGS GLGTAFAAWI MNSFGYVPNH
AQSAAGLEGI IWAFIWAPAL LFALAAIPLL FFRKYEAMEE KIRHDLETVN S