Gene SNSL254_A0044 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A0044 
SymbolnhaR 
ID6486272 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand+ 
Start bp47415 
End bp48308 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content50% 
IMG OID642735488 
Producttranscriptional activator NhaR 
Protein accessionYP_002039270 
Protein GI194443115 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.491871 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones57 
Fosmid unclonability p-value0.174595 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTCATA TTAACTACAA CCATCTTTAT TACTTCTGGC ATGTCTATAA AGAAGGTTCT 
GTCGTGGGTG CCGCAGAGGC GCTTTTTCTG ACGCCGCAAA CCATTACTGG TCAAATTAAA 
GCCCTGGAAG AGCGTTTACA GGGGAAGCTA TTTAAACGTA AGGGACGCGG TCTTGAGCCC 
AGCGAACTGG GCGAGCTGGT TTTTCGCTAT GCGGATAAAA TGTTTACGCT AAGCCAGGAG 
ATGCTGGATA TCGTCAATTA CCGCAAAGAA TCAAACCTGT TGTTTGATGT CGGCGTCGCC 
GATGCTTTAT CCAAGCGTCT GGTCAGCAGC GTTCTGGATG CGGCGGTGGT GGTAGACGAA 
CCCATACATC TGCGTTGCTT CGAGTCCACG CACGAAATGT TGCTCGAACA GCTCAGCCAG 
CACAAGCTGG ATATGATTAT CTCCGACTGC CCGATAGATT CCACGCAGCA GGAGGGGCTA 
TTCTCAGTCA AAATCGGCGA ATGCAGCGTC AGTTTCTGGT GTACGAATCC GCTTCCTGAA 
AAAGCGTTCC CTGCCTGCCT GGAAGAGCGA CGGTTGCTGG TGCCGGGACG GCGCTCAATG 
CTGGGGCGTA AGTTGTTGAA CTGGTTTAAT TCACAGGGGT TGCAGGTTGA GATCCTCGGT 
GAATTTGATG ATGCGGCCTT AATGAAGGCG TTTGGCGCGA CGCACGATGC GATTTTTGTG 
GCACCGAGCC TTTATTCGCT GGATTTTTAT GCCGATGAGT CGGTAATAGA GATTGGGCGC 
GTGGAGAATG TCATGGAAGA ATATCATGCG ATTTTTGCCG AGAGAATGAT CCAGCATCCG 
GCGGTGCAGC GTATTTGCAA TGCGGACTAC TCGGCATTGT TTAAACTACA GTAG
 
Protein sequence
MSHINYNHLY YFWHVYKEGS VVGAAEALFL TPQTITGQIK ALEERLQGKL FKRKGRGLEP 
SELGELVFRY ADKMFTLSQE MLDIVNYRKE SNLLFDVGVA DALSKRLVSS VLDAAVVVDE 
PIHLRCFEST HEMLLEQLSQ HKLDMIISDC PIDSTQQEGL FSVKIGECSV SFWCTNPLPE 
KAFPACLEER RLLVPGRRSM LGRKLLNWFN SQGLQVEILG EFDDAALMKA FGATHDAIFV 
APSLYSLDFY ADESVIEIGR VENVMEEYHA IFAERMIQHP AVQRICNADY SALFKLQ