Gene SNSL254_A0033 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A0033 
Symbol 
ID6483241 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand+ 
Start bp33357 
End bp34361 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content39% 
IMG OID642735478 
Productputative transcriptional regulator 
Protein accessionYP_002039260 
Protein GI194446304 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.792057 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones55 
Fosmid unclonability p-value0.102163 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGCCAA TAAAAAATGC TAAAAAAATT GACTACAATC TGATCAAAGT GTTCGATACG 
GTTATTACTG AAGGAAATGC AACCAGGGCG GCGAGGAAAC TGGATGTCAC GCCTGCGGCG 
ATCTCTCAGG CTCTTCTTCG TTTACAAAAT CTTTATGGCG AAGAGTTATT TATCAGAACC 
CGCAAAGGAT TAGTTCCGTC CAGCAAAGGT AAATCGCTTC ACCAGGTATT TCGCCAGGCA 
ATTGAATCTA TAGAAAGCAC ACTGTGCGAT AAAACAGATG CTCAGGAGAG TAATGAACTC 
ATTGTTCTGG GAAGTGATAT CACTGAAAAT TACTATTTTC CAGCATTGCT GGATACTGTG 
TTGATGAATC GATATATTAT TAAACACTAT GCGATTAAAA AAACAGGGGA ATACTCACCA 
GCCTCCATGC TGACGCATGG CTATGCGGAT GTTATCATGG GAATTCTGGA AATTAAGAAT 
GAGATGATCG AAAGTTATCT TATTGATAAT TTATCTGATT TTGTTTGTGT TTGTGGTGAA 
AAAAGTCCAT TGGTTGGGCT TGAAAAAATT TCTTTATATA ATTTTTATGC TGCCAGACAT 
GCTGTCTATC ATTCAGATAT GTTCTCTTCT TTCACCGCTG ATAGCATTGA TTTATTCAAG 
AGCAGTACGC CTTATGCGGG GCGCAGGGAA ATAGGTTATT ATAGTGATTC ACTATTTGGA 
GTTATCGGTG TTGTTGAAAA AAGCGATATG GTTGCGATTT TGCCAGGAAA GATTGTTACT 
TATTTTAGAG ATGTGCGGCG TTATAATATA AAAATACTAC GTATGCCTGA TGAAATGATT 
TTTCGTACGT TACCCGTTTA TGCTTATCTG GCTACAAACA GCACCCATTA TAAAAATGTC 
AAAAAACTGA TATCAACATT TCAGTCGACC TTTCTTTTTA GCCAGGAAAA GCAGCCTGAC 
GCTTTGGTTG AAGGAAGCAC ATCCTTATGC GATTTGTCGG CTTAA
 
Protein sequence
MRPIKNAKKI DYNLIKVFDT VITEGNATRA ARKLDVTPAA ISQALLRLQN LYGEELFIRT 
RKGLVPSSKG KSLHQVFRQA IESIESTLCD KTDAQESNEL IVLGSDITEN YYFPALLDTV 
LMNRYIIKHY AIKKTGEYSP ASMLTHGYAD VIMGILEIKN EMIESYLIDN LSDFVCVCGE 
KSPLVGLEKI SLYNFYAARH AVYHSDMFSS FTADSIDLFK SSTPYAGRRE IGYYSDSLFG 
VIGVVEKSDM VAILPGKIVT YFRDVRRYNI KILRMPDEMI FRTLPVYAYL ATNSTHYKNV 
KKLISTFQST FLFSQEKQPD ALVEGSTSLC DLSA